Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 120 6e-22 seq13 98.7 2e-15 >seq1 Length=1765974 Score = 120 bits (132), Expect = 6e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||| ||||| || || || || |||||||| | | ||||| ||||| || || || || Sbjct 1746152 ACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCTGGTGGGATACCCTC 1746211 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| ||||| ||||| || || || || |||||||| || | || ||||||||||| Sbjct 1746212 CTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCCAAAGT 1746271 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| ||||| || || ||||| |||||||| Sbjct 1746272 GATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 |||||| || || || || || |||||||| || | || ||||| ||||| || || || Sbjct 1746426 ACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTC 1746485 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| || ||||||||||| ||||| || || ||||| || | || || || | || Sbjct 1746486 CTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGT 1746545 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1746546 GATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||||||||| || || || || |||||||| || | || ||||| ||||| || || || Sbjct 1746697 ACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTC 1746756 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| || ||||||||||| || || || || ||||| || | || || || | || Sbjct 1746757 CTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGT 1746816 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1746817 GATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 100 bits (110), Expect = 6e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || || ||||||||||| || | ||||| |||||||| || || ||| Sbjct 1745886 CCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGAGGGATACCCTCC 1745945 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || ||||||||||| || || || || ||||| ||| | || || || | || Sbjct 1745946 TTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGATGACTCGACCTCAAGCGTA 1746005 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || | ||||| || || |||||||| Sbjct 1746006 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 >seq13 Length=562416 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || ||||| || || || || ||||||||||| | | |||||||| ||||| || || Sbjct 424266 CTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATACCC 424207 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||||||||||| || || || || || ||||| || || || || |||||| Sbjct 424206 TCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAA 424147 Query 82770 GTTATCGTCTTGCCTGTCA 82788 || || ||||| || |||| Sbjct 424146 GTGATGGTCTTACCCGTCA 424128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826784871187