Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 seq5 129 6e-25 seq1 118 1e-21 seq8 96.9 3e-15 >seq7 Length=1099351 Score = 138 bits (152), Expect = 1e-27 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || || ||||| || || || ||||||||| ||| || Sbjct 134391 AGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTG 134450 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| || | |||||| |||| |||| |||||| ||| || ||| Sbjct 134451 AGCCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAG 134510 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCC--GTCTTGC 120817 || | |||||| ||| |||||| || | || ||||||||| ||||| | | ||| | | Sbjct 134511 AAGATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACGTGGACTCGTCGT-C 134569 Query 120818 TGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 || |||||| | ||||| |||||||||||||| | ||| || || Sbjct 134570 GGT-GATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGAT 134617 >seq5 Length=1214282 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| || || || |||||||| | | ||| ||| ||| || |||||||||| Sbjct 997630 GGTCGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACC-GTCTTCAAGCTGCTTGC 997688 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| |||||||| || |||||||| |||||| || Sbjct 997689 CGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCT 997748 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | ||| || || | ||||| ||| || || || || | Sbjct 997749 TGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGG 997808 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 997809 TCTTGACGAAAATCTGCATG 997828 >seq1 Length=1765974 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 133480 TATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGC 133538 || |||| ||| ||| |||| ||| |||||||||||||||||| || | ||||| ||| Sbjct 1746404 TACTGTAGTCGGCCAACGTGCGACC-GTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGC 1746462 Query 133539 TGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTG 133598 ||||| || |||||||| || |||||||| |||||| ||| | | || | |||| Sbjct 1746463 TGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTG 1746522 Query 133599 TCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGC 133658 |||| | ||| || |||| |||| || ||||| |||| ||| || || || |||||| Sbjct 1746523 TCGGATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGC 1746582 Query 133659 AT 133660 || Sbjct 1746583 AT 1746584 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| || | ||||| |||||||| || |||||||| || ||||| Sbjct 1746700 GTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCCTT 1746759 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | || | |||||||| | ||| || |||| |||| Sbjct 1746760 GTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTGAT 1746819 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||| || || || |||||||| Sbjct 1746820 TGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | || || ||||| ||||| |||||||| || |||||| Sbjct 1745889 TCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGAGGGATACCCTCCTTG 1745948 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | |||||| | | ||| || || | || | | Sbjct 1745949 TCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGATGACTCGACCTCAAGCGTAATG 1746008 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| || || || ||||| |||||||| Sbjct 1746009 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||||||||| || | || | ||||| ||||| || ||||| || |||||| Sbjct 1746156 TCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCTGGTGGGATACCCTCCTTG 1746215 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| |||||| | | ||| || || | |||| Sbjct 1746216 TCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCCAAAGTGATC 1746275 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||||| || || |||||||| Sbjct 1746276 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || || | || || ||||||||||| ||||| || || ||||| Sbjct 1746970 GTCTTCAAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTT 1747029 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||| |||| | ||| || |||| ||| | Sbjct 1747030 GTCTTGGATCTTGGCCTTGACGTTATCGATCGTATCGGAAGACTCGACCTCGAGGGTAAT 1747089 Query 133625 GGTTTTGCCGGTCAG 133639 ||| |||||||| || Sbjct 1747090 GGTCTTGCCGGTGAG 1747104 >seq8 Length=1060936 Score = 96.9 bits (106), Expect = 3e-15 Identities = 294/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Minus Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || ||| | || ||||| ||||||| |||| |||||| | |||| ||||| ||| Sbjct 58639 CTGGTATAAGGCTCAAAGCACTCGTTCCATCCCAGAATCTGTGAAGTCGAAGCCGTCGGC 58580 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT-TTTGCGCTTCAGAGC 148426 || ||| || |||| |||||| | | || ||| || ||||| ||||| | | Sbjct 58579 ATAGGCGCAACAAGCAACGAGTTTCTAATCCCAGTCTTTGCAATCTTTGC-CTTCAAACC 58521 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 |||||| ||||| || || || || || ||| ||| ||||| ||||| || | Sbjct 58520 CGCCCAATCCCAAAGATCCGTTGGCGTGACACCCCAAGCGTCATACTGAAGAATACCCTG 58461 Query 148487 GCT-AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC 148545 || | || | | |||||||||| |||| || | | | | |||| ||| | Sbjct 58460 ACTGATAGGTGAT-CCCTCGTACGTCGAATACGCACCCTCCCTCTCTGCCATCTCGGACG 58402 Query 148546 TCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCG 148605 |||||||||||| | | || |||||||| | || || |||||| ||| || Sbjct 58401 AGGCCTCGAGCGCGGCATGATAGATCGTCTCTGAGATCTGGGCGTTGAGAAGCTTGGC-- 58344 Query 148606 ACTCG---CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGC 148662 ||| || ||| | ||||| || || || || || || || || ||||| | | Sbjct 58343 -TTCGGGACTGTCGAAAGGCATCCGAAGTGCCATGAAGGCATCTGCCAGACCCTGAATAC 58285 Query 148663 CCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGG 148721 | | || | ||| ||||| ||||||||| ||| || |||| || | || |||| | Sbjct 58284 CGAGACCGACGGGACGGTGACGCATGTTGGAGTTGCGAGC-CTCTGGAACGGGGTAGTAG 58226 Query 148722 TTGCGGTCGATGATCTTG-TCAAG 148744 ||| |||||||| |||| ||||| Sbjct 58225 TTGACGTCGATGACCTTGTTCAAG 58202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420600588920