Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 1e-13 >seq8 Length=1060936 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/279 (68%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 110724 TATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| ||||||| ||||| | | || |||| || |||||||||||||||||| Sbjct 57589 TATGTCGATCAAGGAGGTAACAAGCGTCCCGGTGCATTCGCCATCTATCTCGAACCTTGG 57648 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||| | || | ||||| || | || | || || ||||| || |||||| | Sbjct 57649 CATGCCGACGTCTTTGACTTTCTCGACTTGCGCAAGAATCACGGCAAGGAAGAAGTTCGC 57708 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 ||||| || || || ||||| | |||||| | || || |||||||| || || |||| Sbjct 57709 GCACGCGACTTGTTCTATGCGCTTTGGATTCCCGACTTGTTCATGAAGCGCGTCGAAGAG 57768 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCT-CATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||| ||| | || ||||||||| | || | || ||| | || ||||| | | Sbjct 57769 GATGGTGACTGGACACTCATGTGTCCTGCCGAGTGCCCCGGGT-TGTCGGATGTGCACAG 57827 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA 110998 ||||||||| | |||||| || ||||| || || Sbjct 57828 CGCAGAGTTTGACAAGCTTTACATCAAGTATGAGAATGA 57866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812298200713