Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 201 2e-45 seq8 147 3e-29 seq10 114 2e-19 >seq7 Length=1099351 Score = 201 bits (222), Expect = 2e-45 Identities = 289/394 (73%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 1455922 GATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT-TGCCAGA 1455980 ||||| ||||| ||| ||||| | || |||||| ||||| |||| |||| || Sbjct 134803 GATGGTATCGTCAACGAAAACCTCGTCGAGCGCTTTTCAGCCGAGGTGCAATGTGCC-GA 134745 Query 1455981 GGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTC 1456040 ||| | || || || ||||||||| || || ||||||||||||||||||||||| Sbjct 134744 GGCCAAGTGCTTCTATGGCTTCCAGATCATGATGGAGAACATCCACTCTGAAACCTACTC 134685 Query 1456041 GCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCA 1456099 ||| |||||||||||||| |||||||||| | | | | ||| ||||||| |||| Sbjct 134684 CCTCTTGATCGACACCTACATCAAGGACCCCG-CTCGCCGCACCTACCTCTTCGAAGCCA 134626 Query 1456100 TCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGG 1456159 | ||||| | || | | | ||||||||||||||||| | ||||||| | | | Sbjct 134625 TTGACACCATCCCCTGCATCCGCAAAAAGGCCGACTGGGCTCTTCGTTGGATCACCGACG 134566 Query 1456160 AGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTT 1456218 | | || || ||||||||||| || | | ||||||| ||||||||||||||| || Sbjct 134565 A-CGAGTCCAC-GTTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTT 134508 Query 1456219 CTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTC 1456277 ||| ||| || ||| ||||||| |||||||||||||| || ||||||||||| | || Sbjct 134507 CTCTGGCTCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGC-TC 134450 Query 1456278 TGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 |||| |||||| | ||| || ||||||| Sbjct 134449 ACCTTTTCCAACGAGCTCATCTCCCGTGACGAAG 134416 >seq8 Length=1060936 Score = 147 bits (162), Expect = 3e-29 Identities = 186/254 (73%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 259930 GCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAA 259989 |||||| || || ||||| || | ||| || ||||||||||| ||| | | |||| | Sbjct 57348 GCTCTTCAACGCAGGCACCCCTCACCCCCAACTCTCGTCGTGCTTCCTGGTCGCCATGCA 57407 Query 259990 GGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGC 260049 | || |||||||| |||||||| |||||||||||| ||| || | ||||||||| | Sbjct 57408 GCAAGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGTGCTATGATCTCCAAGAC 57467 Query 260050 GGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCG 260107 ||||||||| |||||| | || || ||||| | ||| | ||| ||||| | || Sbjct 57468 GGCCGGCGGTATCGGTCT--CCACATCCACAACATTCGCTCAAAAGGCTCCTACATTGCC 57525 Query 260108 GGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCG 260167 ||||| |||||| | || ||||| | || ||||||||||||| | ||| || || Sbjct 57526 GGCACTAACGGCTACTCGAACGGTATCGTTCCCATGCTTCGCGCATACGACGCTACAGCT 57585 Query 260168 CGCTACGTCGACCA 260181 || || ||||| || Sbjct 57586 CGTTATGTCGATCA 57599 >seq10 Length=745633 Score = 114 bits (126), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||||||||| |||||| || | | ||| ||||||||| || Sbjct 476003 ATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC-TCCAACAAGGCC 475950 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||| | |||||||||||| | ||||| |||| || |||| |||||||| Sbjct 475949 ATGTCAATCCTCAACTCGTTTGTCTATGACATTTTCGAGCGTATCGCGACCGAGGCTTCC 475890 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||| | |||| | ||| || || |||| ||||| ||||| || || Sbjct 475889 AAGCTGGCGTCTTACAACCACCGCTCGACCATTTCGTCGCGTGAGATTCAGACGGCTGTC 475830 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||| | | ||| || || ||| |||||| || || |||||||| Sbjct 475829 CGTTTGATTCTTCCCGGTGAGCTTTCCAAGCACGCTGTTTCAGAGGGCAC 475780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808017089346