Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 seq13 89.7 5e-13 >seq1 Length=1765974 Score = 109 bits (120), Expect = 6e-19 Identities = 133/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 134536 TGTAGTCG-CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGC 134594 |||||||| |||||| || || ||| |||||||| ||||| ||||| || | ||||||| Sbjct 1746407 TGTAGTCGGCCAACG-TGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGC 1746465 Query 134595 TGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCG 134654 ||||| || || || || || || || ||||| ||| || || ||| | |||||| Sbjct 1746466 TGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCG 1746525 Query 134655 GACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || || || || ||||| || || || || ||||| Sbjct 1746526 GATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 134536 TGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCT 134595 ||||||| ||| ||| || ||| || ||||| ||||| ||||| || | |||||||| Sbjct 1746678 TGTAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746737 Query 134596 GATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGG 134655 |||| || || || || || || || ||||| ||| || || ||| | ||||||| Sbjct 1746738 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGG 1746797 Query 134656 ACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || || || || ||||| || || || || ||||| Sbjct 1746798 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || |||||||| ||||| ||||| ||||||||||| || || || || || || || || Sbjct 1746156 TCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCTGGTGGGATACCCTCCTTG 1746215 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || ||||| ||| | ||||| ||||| || || || | ||| || Sbjct 1746216 TCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCCAAAGTGATC 1746275 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || || ||||| Sbjct 1746276 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 >seq13 Length=562416 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| |||||||| ||||| ||||| ||||||||||| ||||| || || || || || || Sbjct 424261 GTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATACCCTCCTT 424202 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 |||||||| || ||||| ||| | ||||| || || || || || | ||| || Sbjct 424201 GTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAAGTGAT 424142 Query 134678 GGTTTTACCGGT 134689 ||| ||||| || Sbjct 424141 GGTCTTACCCGT 424130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398191523160