Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 105 9e-18 seq6 100 4e-16 >seq7 Length=1099351 Score = 105 bits (116), Expect = 9e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||| ||||| ||||| || ||||| || |||||||| |||||||| || |||| |||| Sbjct 134436 TCGTTGGAAAAGGTGAGCCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCA 134495 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761 || || ||||| ||||||||||| || || || ||||| |||| Sbjct 134496 AAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAAAGCAA 134538 >seq6 Length=1191995 Score = 100 bits (110), Expect = 4e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 39517 AGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTAC 39576 ||| ||||| | |||||| ||||| || || || ||||| | ||| | || | Sbjct 859699 AGCATCCGTCAAAAACTCCTTTTCAATCTCCACTGCCTCCTCCACAATCTCCCTCACCTC 859640 Query 39577 CTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAG 39636 |||||| | ||||| ||||| | | | || ||||| ||||| || |||| Sbjct 859639 CTCATCCAAACATCGATGCTTCAAATGATCATAGATCAAGCAAGCGAAATCCGTATGTGT 859580 Query 39637 GCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTT 39696 || ||||| | ||| || | ||| || ||||| || | || ||||| || || ||||| Sbjct 859579 TCCTTCATCACGACTGATGAGTTCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTT 859520 Query 39697 TTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 || ||||| || ||||| || || || || ||||||||||| ||||| || ||| || Sbjct 859519 CTTTAGCCAGAAGATGGCGGCGAATGAACCGGAAAAGAAGATACCTTCGACACATGCGAA 859460 Query 39757 TGC 39759 ||| Sbjct 859459 TGC 859457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908516650120