Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 118 8e-22 >seq6 Length=1191995 Score = 118 bits (130), Expect = 8e-22 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 ||||||||||||| || | ||||| | ||||| | |||| || | || || | Sbjct 859377 CAGTACCTGCGATCCAAAAGAAAGCTCAATGGGCTATGAAATACATCA---CACCCGACT 859433 Query 44118 ---CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | || || ||| || | || || ||| ||| ||||| || |||||||| || | Sbjct 859434 TGCCGTTCCGAACACGGCTCATAGCATTCGCATGTGTCGAAGGTATCTTCTTTTCCGGTT 859493 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | || || ||||| || ||| ||||||| ||||| ||||||| || ||||| ||||| | Sbjct 859494 CATTCGCCGCCATCTTCTGGCTAAAGAAGCGAGGCCTGATGCCGGGCTTGACCTTTTCCA 859553 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||| | || |||||||||||||| |||| ||||| ||||||||| Sbjct 859554 ATGAACTCATCAGTCGTGATGAAGGAACACATACGGATTTCGCTTGCTTG 859603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455840148165