Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 seq4 86.0 8e-12 >seq7 Length=1099351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||| || || ||||| || || || || || ||| || || Sbjct 134396 GGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCC 134455 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 |||||||| || |||||||| | ||| | || | ||| || || || |||||||||| Sbjct 134456 GGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGAGCCAGAGAAGAAGA 134514 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||||| || ||||| |||| ||||| ||||| || Sbjct 134515 TGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAA 134554 >seq4 Length=1409158 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 ||||| |||||||| | | ||| ||||| || ||||| || ||||| | | || Sbjct 957698 AAGAGGTCGCGAACGCGCGAAGGACCGACACCGACGAACATTTCAACAAACTCGGAACCA 957639 Query 11744 GAGCACTGG-ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| || | | ||||||||| | | |||||| || ||||| ||| |||||||| || Sbjct 957638 GAG-ACAGATAGGAATGGGACCTGAGCTTCACCAGCTGTGGCTTTGGCAAGGAGGGTTTT 957580 Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || ||||| || ||||| || | |||||| || || ||||||||||| Sbjct 957579 ACCGGTACCGGGTGGACCCGAAAGGATGGCGCCACGAGGAATCTTGGCACC 957529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031740936800