Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8 145 9e-30 seq7 125 9e-24 seq6 84.2 3e-11 >seq8 Length=1060936 Score = 145 bits (160), Expect = 9e-30 Identities = 405/619 (65%), Gaps = 7/619 (1%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 |||||||||||||| | | | || |||||||| || || | || ||||||||| | | Sbjct 57965 GCATCCTTGTAAAGGAGGAAAGGACCACCCGTCTCAGTCTGAGCCTCGAGAATAGCATAC 57906 Query 118890 CAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 || | | ||| | ||| ||| | | ||| | ||| ||||| |||| Sbjct 57905 CAAAGCTTTTGAGCCTTGATAGTTTTCTTGCCCTTCATCTCATTCTCATACTTGATGTAA 57846 Query 118950 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 119009 || ||||||||| | | | || || | ||| || || | || || | | Sbjct 57845 AGCTTGTCAAACTCTGCGCTGTGCACATCCGACAACCCGGGGCACTCGGCAGGACACATG 57786 Query 119010 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 || | ||| | |||| |||| || || ||||||||||| | ||| || ||||| ||||| Sbjct 57785 AGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATCCAAAGCGCA 57726 Query 119070 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||| | || || |||| ||||||| | || ||||| ||||| || | |||| Sbjct 57725 TAGAACAAGTCGCGTGCGCGAACTTCTTCCTTGCCGTGATTCTTGCGCAAGTCGAGAAAG 57666 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 119186 || | || || || ||||| ||||| || || | |||| || || ||| | Sbjct 57665 TCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACCGGGACGCTTGTTA 57606 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || | || | ||||| | || || |||| || | |||||||| |||| |||||| Sbjct 57605 CCTCCTTGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAACGATACCG 57546 Query 119247 TCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | || | ||| || || || || || ||| || || | | | | |||||||| Sbjct 57545 TTCGAGTAGCCGTTAGTGCCGGCAATGTAGGAGCCT--TTTGAGCGAATGTTGTGGATGT 57488 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | | ||| ||||| || ||| ||| ||||| || ||| | |||| || |||||| Sbjct 57487 GGAGACCGATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTGTCGTAGA 57428 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||||||||| || | |||| |||||||| ||| | ||| || | Sbjct 57427 TGCCTTCGATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTGGGGGTGAG 57368 Query 119425 GTGTACCAGCGTTGAAGAG 119443 | || || ||||||||||| Sbjct 57367 GGGTGCCTGCGTTGAAGAG 57349 >seq7 Length=1099351 Score = 125 bits (138), Expect = 9e-24 Identities = 179/250 (72%), Gaps = 14/250 (6%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||| ||||||||||||||||| || || || ||| || || Sbjct 134396 GGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCC 134455 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | | ||| ||||||||||||||||| Sbjct 134456 GGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAGAT 134515 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGT---- 130188 ||||| || || || |||| || ||||| ||||| | ||||| | || Sbjct 134516 GCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACG---TGGACTCGTCGTCGGT 134572 Query 130189 -ATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCG 130247 ||| ||| | | ||||| | |||||||| ||| || |||| ||| | || | Sbjct 134573 GATCCAACGA----AGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGG 134628 Query 130248 CTTCAAAGAG 130257 |||| ||||| Sbjct 134629 CTTCGAAGAG 134638 >seq6 Length=1191995 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || || ||||| |||||||||||| || ||| || || ||||| || || |||||| Sbjct 859578 CCTTCATCACGACTGATGAGTTCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTTC 859519 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || || ||||| || || |||||||| || || ||||| ||||| Sbjct 859518 TTTAGCCAGAAGATGGCGGCGAATGAACCGGAAAAGAAGATACCTTCGACACATGCGAAT 859459 Query 130154 GCAAAGAGACG 130164 || | ||| || Sbjct 859458 GCTATGAGCCG 859448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434944895480