Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq1 102 1e-16 seq13 95.1 1e-14 seq6 89.7 6e-13 >seq7 Length=1099351 Score = 122 bits (134), Expect = 1e-22 Identities = 124/159 (78%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||| ||||| || | || ||||| || ||||| |||||||||||||| ||||| Sbjct 134554 TTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTT- 134496 Query 94858 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| | || | |||||||||||||| || |||||||| || ||| ||| |||||||| Sbjct 134495 TGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCAACGA 134436 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| |||||||| || |||||| || ||||| Sbjct 134435 GCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC 134397 >seq1 Length=1765974 Score = 102 bits (112), Expect = 1e-16 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 9683 GCACTGCG-TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT 9741 |||||||| |||||| || | ||||| | ||| || |||||||||||| ||||| || Sbjct 1313237 GCACTGCGCTTGCTT-CCGATTGCATCGAGCTCGTCGATGAAGACGATGGATGGTGCCTT 1313179 Query 9742 TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 9801 | |||||| || ||||||| || || || ||||||||||| ||||| ||||||||||| Sbjct 1313178 CTTGCGAGCTGCTGCAAAGAGTTCGCGGACGCGCTTGGCGCCTACACCGACAAACATCTC 1313119 >seq13 Length=562416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| ||||||||||||||||| || ||||| || ||||| |||||||| ||||||| ||| Sbjct 391603 CTTTCCACGAAGAGGGAAGACGCCATAGTGGTCGCGACCGACGACGGAAAGACCCGAGAC 391544 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT 169454 ||| |||| || || || || || || || | ||||| || |||| Sbjct 391543 TGCCAGAGCTTTGGCGGAATCTCCTTCTGTCAAAATGAGGGTGCATT 391497 >seq6 Length=1191995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || ||| | ||||| || ||||| || ||||||||||| || ||||| ||| ||| || Sbjct 859448 CGGCTCATAGCATTCGCATGTGTCGAAGGTATCTTCTTTTCCGGTTCATTCGCCGCCATC 859507 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||||| ||||||||||| || ||||| || | ||| ||||| || || ||| | Sbjct 859508 TTCTGGCTAAAGAAGCGAGGCCTGATGCCGGGCTTGACCTTTTCCAATGAACTCATCAGT 859567 Query 94927 CGTGACGAGGGA 94938 ||||| || ||| Sbjct 859568 CGTGATGAAGGA 859579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260559404920