Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 145 2e-29 seq1 116 1e-20 >seq5 Length=1214282 Score = 145 bits (160), Expect = 2e-29 Identities = 273/400 (68%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || || || || |||||| | || || |||||||| | ||| || || || | Sbjct 636169 CCTGAGGAGATCTCTTCCATGGTTCTCGTCAAGATGAAGGAGACTGCCGAGGCCTACCTC 636228 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| ||| || | | || ||| | || || || ||||| ||||| || | |||||| Sbjct 636229 GGTGGAACCGTCGCCAAGGCCGTTGTCACCGTCCCCGCCTACTTTAACGACTCTCAGCGT 636288 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || ||| |||| | |||| || | || || || || Sbjct 636289 CAGGCCACCAAGGACGCCGGTCTCATCTCGGGTCTCGATGTCCTTCGTATCATCAACGAG 636348 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| ||||| || ||||| || || || || || | | ||| || || || | Sbjct 636349 CCCACCGCTGCCGCCATTGCTTACGGTCTCGACAAGAAGTCTGAGGGTGAGAAGAACGTC 636408 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| || || ||||| || || ||||| || || || || | || || || Sbjct 636409 CTCATCTTTGACTTGGGAGGTGGAACATTCGATGTCTCCCTCCTTACCATCGAGGACGGT 636468 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || ||||||||||| || || | ||||| || || ||||| || Sbjct 636469 ATCTTCGAGGTCAAGGCCACTGCTGGTGACACTCACTTGGGTGGTGAGGACTTTGACAAC 636528 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 |||||||| || ||||| | || || ||||| |||| Sbjct 636529 CGTCTCGTCAACCACTTTGTCCAGGAGTTCAAGCG-CAAG 636567 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || ||||| ||||| || || ||||| | Sbjct 997600 ACCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGC 997659 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || |||||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 997660 AAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGG 997719 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || || || || || || || || || || |||| || || | || || Sbjct 997720 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 997779 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || | ||||| || || || || || || ||||||||||| Sbjct 997780 CTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 997827 Score = 107 bits (118), Expect = 6e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 349208 ATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATA 349267 || ||||| || || || || || ||||| || ||||||||||| || || || ||||| Sbjct 635787 ATTGATTTGGGCACGACCTACTCCTGTGTCGCCGTTTGGCAAAACGACCGCGTTGAAATC 635846 Query 349268 ATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAG 349327 || ||||| || || |||||| | || || || || ||||||||||| | ||| ||||| Sbjct 635847 ATCGCAAACGACCAGGGTAACCGCACTACCCCTTCGTACGTTGCATTCAACGACTCTGAG 635906 Query 349328 CGTATGATTGGTGATTCTGCAAAAAATCA 349356 ||| | ||||| ||| | || || || || Sbjct 635907 CGTCTCATTGGAGATGCCGCCAAGAACCA 635935 >seq1 Length=1765974 Score = 116 bits (128), Expect = 1e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || |||||||| || || || |||||||| ||||| |||||||||||||| || Sbjct 1746692 GTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATA 1746751 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || |||||||| || || || || || || |||| || |||| || || || Sbjct 1746752 CCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCG 1746811 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||||| || || | || || ||||| |||||||| Sbjct 1746812 AGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 113 bits (124), Expect = 1e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || || || || || || || || |||||||| ||||| |||||||||||||| Sbjct 1746418 AACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGG 1746477 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| || || ||||| || || |||| || |||| || || Sbjct 1746478 ATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGATGACTCGACC 1746537 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||||| || || | || || ||||| |||||||| Sbjct 1746538 TCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 111 bits (122), Expect = 5e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||| || || || || ||||||||||| || || || || || ||||| || Sbjct 1745880 GTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGAGGGATA 1745939 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || |||||||| || || || || || || |||| ||||||| || || ||| Sbjct 1745940 CCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGATGACTCGACCTCA 1745999 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||| ||||| ||||| || || || || || |||||||| Sbjct 1746000 AGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 100 bits (110), Expect = 9e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || |||||||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 1746962 GTACGACCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATA 1747021 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || || || || || || || || ||||| |||| ||| || | || || || Sbjct 1747022 CCCTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATCGTATCGGAAGACTCGACCTCG 1747081 Query 140694 AGTGTAACTGTCTTTCCGGTTAG 140716 || |||| ||||| ||||| || Sbjct 1747082 AGGGTAATGGTCTTGCCGGTGAG 1747104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253759331499