Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8 196 5e-45 seq7 120 3e-22 >seq8 Length=1060936 Score = 196 bits (216), Expect = 5e-45 Identities = 327/473 (69%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 79315 ACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA 79374 ||||| | || || ||||||||| || ||||| || |||||| | |||| || Sbjct 57821 ACATCCGACAACCCGGGGCACTCGGCAGGACACATGAGTGTCCAGTCACCATCCTCTTCG 57762 Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434 || || |||||| | ||| || ||||| || || ||| | |||||| || | Sbjct 57761 ACGCGCTTCATGAACAAGTCGGGAATCCAAAGCGCATAGAACAAGTCGCGTGCGCGAACT 57702 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 || || | ||| || ||| |||| ||||||||||| | || |||||| ||||| || Sbjct 57701 TCTTCCTTGCCGTGATTCTTGCGCAAGTCGAGAAAGTCAAAGACGTCGGCATGCCAAGGT 57642 Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCC 79554 || |||||||||||||| | ||| |||||| || || || | ||| || || || Sbjct 57641 TCGAGATAGATGGCGAATGCACCGGGACGCTTGTTACCTCCTTGATCGACATAACGAGCT 57582 Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTG 79614 || || | | | || |||||||| ||||| |||| | | |||||| || ||| Sbjct 57581 GTAGCGTCGTATGCGCGAAGCATGGGAACGATACCGTTCGAGTAGCCGTTAGTGCCGGCA 57522 Query 79615 ATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTG 79674 || | || | | |||||||| | ||||| ||||| || |||| | |||| Sbjct 57521 ATGTAGGAGCCTTTTGAGCGAATGTTGTGGATGTGGAGACCGATACCGCCGGCCGTCTTG 57462 Query 79675 GAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATA 79734 ||||| || ||| ||||||||| ||||||||||| ||||||||||| | || ||| Sbjct 57461 GAGATCATAGCACACGTCTTGAGCGTGTCGTAGATGCCTTCGATCGAGTCTTGCTGCATG 57402 Query 79735 GCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 |||||||||||||| ||| | || |||| || || ||||||||||| Sbjct 57401 GCGACCAGGAAGCACGACGAGAGTTGGGGGTGAGGGGTGCCTGCGTTGAAGAG 57349 Score = 123 bits (136), Expect = 3e-23 Identities = 306/462 (66%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 || |||||||| || || |||| || | ||| || ||||| || || ||| || Sbjct 57349 CTCTTCAACGCAGGCACCCCTCACCCCCAACTCTCGTCGTGCTTCCTGGTCGCCATGCAG 57408 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 | ||| || || ||||||||||| ||||||||| ||| || ||||||||| | Sbjct 57409 CAAGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGTGCTATGATCTCCAAGACG 57468 Query 19337 TCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGG 19396 |||| |||||||| ||||| | || || || || | || | || || Sbjct 57469 GCCGGCGGTATCGGTCTCCACATCCACAACATTCGCTCAAAAGGCTCCTACATTGCCGGC 57528 Query 19397 ACGAACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || ||||| || ||| ||||||||| || ||||| |||| | | || || || | Sbjct 57529 ACTAACGGC-TACTCGAACGGTATCGTTCCCATGCTTCGCGCATACGACGCTACAGCTCG 57587 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 || ||| | || || || ||| || || | ||||||||||| ||||| || || Sbjct 57588 TTATGTCGATCAAGGAGGTAACAAGCGTCCCGGTGCATTCGCCATCTATCTCGAACCTTG 57647 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 ||| || |||||| | || || ||||| ||||| ||| || || | || || | || Sbjct 57648 GCATGCCGACGTCTTTGACTTTCTCGACTTGCGCAAGAATCACGGCAAGGAAGAAGTTCG 57707 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 | |||||| | ||| || | |||||||| ||| | |||||| || || || | Sbjct 57708 CGCACGCGACTTGTTCTATGCGCTTTGGATTCCCGACTTGTTCATGAAGCGCGTCGAAGA 57767 Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGG 19677 ||| | || ||| || ||||| || ||| ||||| || Sbjct 57768 GGATGGTGACTGGACACTCATGTGTCCTGCCGAGTGCCCCGG 57809 >seq7 Length=1099351 Score = 120 bits (132), Expect = 3e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | || || || |||||||| ||| || || ||||||||||||||||| || Sbjct 134554 TTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTTT 134495 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | | || ||||||||||| |||||||| |||||||| || || | || ||||||||| Sbjct 134494 GCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCAACGAG 134435 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||| || ||||| Sbjct 134434 CTCATCTCCCGTGACGAAGGTCTCCA 134409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524573733520