Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 183 3e-41 seq13 125 8e-24 seq6 100 3e-16 >seq8 Length=1060936 Score = 183 bits (202), Expect = 3e-41 Identities = 317/461 (69%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || |||||||| || || |||||| || | ||| ||||||||||| || ||| || Sbjct 57349 CTCTTCAACGCAGGCACCCCTCACCCCCAACTCTCGTCGTGCTTCCTGGTCGCCATGCAG 57408 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 | ||||||||||| ||||||||||| ||||||||| |||||| ||||||||| | Sbjct 57409 CAAGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGTGCTATGATCTCCAAGACG 57468 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGG 53473 | || ||||||||| ||||| | ||| | || | || ||| | || || Sbjct 57469 GCCGGCGGTATCGGTCTCCACATCCACAACATTCGCTCAAAAGGCTCCTACATTGCCGGC 57528 Query 53474 ACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 || |||||| | | | || ||||| || ||||| |||| | | || || || || Sbjct 57529 ACTAACGGCTACTCGAACGGTATCGTTCCCATGCTTCGCGCATACGACGCTACAGCTCGT 57588 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 || ||| | || || ||| ||||| || | ||||||||||| ||||| || ||| Sbjct 57589 TATGTCGATCAAGGAGGTAACAAGCGTCCCGGTGCATTCGCCATCTATCTCGAACCTTGG 57648 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 || |||||| | | || |||||||| |||| |||||| || | ||||| | ||| Sbjct 57649 CATGCCGACGTCTTTGACTTTCTCGACTTGCGCAAGAATCACGGCAAGGAAGAAGTTCGC 57708 Query 53654 TGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG 53713 || ||| |||| || || |||||||| ||| | |||||| | || || || Sbjct 57709 GCACGCGACTTGTTCTATGCGCTTTGGATTCCCGACTTGTTCATGAAGCGCGTCGAAGAG 57768 Query 53714 GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG 53754 || | || ||| || ||||| || |||||||||||| Sbjct 57769 GATGGTGACTGGACACTCATGTGTCCTGCCGAGTGCCCCGG 57809 >seq13 Length=562416 Score = 125 bits (138), Expect = 8e-24 Identities = 188/263 (71%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 117342 CAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCA 117401 |||||| ||| ||||||||||| ||| | || |||| | ||| | |||||| ||| | Sbjct 392594 CAGCAATACGAGTACCGAATTGACCATTGGGGTCCAGCAAGTTGATGTTGTTACTGCCTA 392535 Query 117402 CAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG--GAGGCTCGCCTCACCATGGTGATA 117459 ||||||| ||||| | || || | || || ||| || | ||||| ||||| || Sbjct 392534 CAAAGTTCTGAGCGAGACCAACGATGG--CCATGGTGAGACTGACTTCACCGTGGTGGTA 392477 Query 117460 CGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGG 117517 ||||||| ||||| |||||||| || || || ||||| || || ||||| || Sbjct 392476 AGCCGTCTTCTCCGAGACGTAGCCAGCAAGTTGCTGAACCTTGATCTCCTTGACG--AGA 392419 Query 117518 TTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACG 117577 || ||||| ||| || | | |||||||||||||| ||||| || ||||| || || Sbjct 392418 TTACGCTTGAAGCAACCAAAGAGCACCTTGCGCTGACCGGGCTTGAGGCCATCGGCAACT 392359 Query 117578 TGAGGGATCGAACGCTTGATGTC 117600 ||| |||||||| || |||| Sbjct 392358 GAAGGAATCGAACGAATGTTGTC 392336 >seq6 Length=1191995 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 || || ||| ||| | |||||||| | || || | |||||| ||||| | | ||| Sbjct 859596 GCGAAATCCGTATGTGTTCCTTCATCACGACTGATGAGTTCATTGGAAAAGGTCAAGCCC 859537 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || || |||||||| | ||| |||||||| ||| ||||| |||||||| Sbjct 859536 GGCATCAGGCCTCGCTTCTTTAGCCAGAAGATGGCGGCGAATGAACCGGAAAAGAAGATA 859477 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGT-TGCGCGAACGGTGCATCGGAAGTCATCCA 74929 ||||||||||| || || || | || ||| | || |||||| |||| || || | Sbjct 859476 CCTTCGACACATGCGAATGCTATGAGCCGTGTTCG-GAACGGCAAGTCGGGTGTGATGTA 859418 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC 74968 || |||||||| |||||| || || |||||| || Sbjct 859417 TTTCATAGCCCATTGAGCTTTCTTTTGGATCGCAGGTAC 859379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215774273400