Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq5 140 4e-28 seq8 122 1e-22 seq13 100 3e-16 seq6 87.8 2e-12 >seq1 Length=1765974 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| ||||| |||||||| |||||| | Sbjct 1746043 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTTGAGGTCGAGTCATCT 1745984 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || ||||||||||| Sbjct 1745983 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCAGACCAA 1745924 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || || |||||||| ||||| |||||||||| ||||| || || ||||| Sbjct 1745923 CAGCGCCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCCGACTA 1745868 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || |||||||| || || || ||||| |||||| Sbjct 1746855 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746796 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || ||||| || ||| Sbjct 1746795 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746736 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||| || ||||| || ||||| || || || | ||||||||| |||||||| Sbjct 1746735 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTTGCAGACTA 1746680 Score = 138 bits (152), Expect = 1e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || |||||||| || || || ||||| |||||| Sbjct 1746584 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746525 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||||||||| || ||||| || ||| Sbjct 1746524 GACACGATCGACAACGTAAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746465 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||| || ||||| || ||||| |||||||| | ||| || | || ||||| Sbjct 1746464 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACGTTGGCCGACTA 1746409 Score = 122 bits (134), Expect = 1e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| ||||| || ||||| ||||| |||| || | || | ||| Sbjct 1747104 CTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCCGATACGATCGATAACGTCAAG 1747045 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || ||||||||||| |||||||| ||||||||||| || || ||||| || Sbjct 1747044 GCCAAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTTATCTTTGCCGGA 1746985 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || || || | ||||||||| || ||||| Sbjct 1746984 AAGCAGCTTGAAGACGGTCGTACCCTTGCCGACTA 1746950 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || | || |||||||| || ||| | || || ||||| Sbjct 1746310 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCA 1746251 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || || || ||||||||||| || || |||||||| Sbjct 1746250 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 1746191 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||| | || ||||| || ||||| ||||| |||| ||| || ||||||| || Sbjct 1746190 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACATTAGCAGATTA 1746135 >seq5 Length=1214282 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || | ||||| ||||| Sbjct 997827 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 997768 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| || ||||| |||||| Sbjct 997767 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 997708 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || || | ||| ||||| || || || || Sbjct 997707 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTACAAC 997648 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||| || || | ||||| || ||||| Sbjct 997647 ATCCAAAAGGAGTCGACCCTTCACCTCGTGCTTCGTCTGCGTGGTGG 997601 >seq8 Length=1060936 Score = 122 bits (134), Expect = 1e-22 Identities = 572/907 (63%), Gaps = 66/907 (7%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| | || ||||| ||||||| |||| ||| || ||||| ||| |||| || Sbjct 58313 CATGAAGGCATCTGCCAGACCCTGAATACCGAGACCGACGGGACGGTGACGCATGTTGGA 58254 Query 80775 -TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 | || | |||| |||| ||||| |||| |||||||| ||||| |||| | Sbjct 58253 GTTGCGAG-CCTCTGGAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAAGTTGAAGG 58195 Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCC---TTCA 80887 | || | ||||| ||||| |||| |||||| || | || || || | Sbjct 58194 TGACCGACTTGGTAACCGAGTGAAGCTTCTTGAAGTCGTATGTCTTGTCGGCCATGTTGA 58135 Query 80888 CAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 | ||||| || || || ||||| || || ||||| ||||| || || || | | | | | Sbjct 58134 CGAATGCGGGCAAAGCA-AGGGAAGCGAGGTTGCAGACGGCGACTTCATCTGGAGCGGAA 58076 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||||| ||| || ||||| | || || ||||| || || || || || |||||||| Sbjct 58075 TACTCGATGATCTCGGTGCAGAGGTTGGATGACTTGATGGTGCCGAGATTCTTCTGGTTC 58016 Query 81007 GACTTGGC-----------------------------------GTTGCAAGCGTCCTTGT 81031 |||||||| |||| ||| ||||||| Sbjct 58015 GACTTGGCTGGCCGTCAGCTTTTCCTCGCTCAAGAAACTCACAGTTGGCAGCATCCTTGT 57956 Query 81032 AGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGC 81091 | | | | || ||| ||||| ||| | || ||| || || | ||||| || Sbjct 57955 AAAGGAGGAAAGGACCACCCGTCTCAGTCTGAGCCTCGAGAATAGCATACCAAAGCTTTT 57896 Query 81092 GCGCCTTGACCACCTTGCGGAATTTGCCTTCGGC-----CACATACTTGGCGTAA-GCTT 81145 | ||||||| | || | || ||||| | | |||||||| |||| |||| Sbjct 57895 GAGCCTTGAT-AGTTTTC----TTGCCCTTCATCTCATTCTCATACTTGATGTAAAGCTT 57841 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 ||| |||| || | ||| | || | | | ||||||||| ||| ||||| || Sbjct 57840 -GTCAAACTCTGCGCTGTGCACATCCGACAACCCGGGGCACTCGGCAGGACACATGAGTG 57782 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 |||||| || | || || ||||||||| ||| || ||||| || || || Sbjct 57781 TCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATCCAAAGCGCATAGA 57722 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 ||| |||||| ||| | || || | || || || |||||| ||||||||||| | Sbjct 57721 ACAAGTCGCGTGCGCGAACTTCTTCCTTGCCGTGATTCTTGCGCAAGTCGAGAAAGTCAA 57662 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GC 81379 || ||| |||||||| || || ||||| | ||||| | || | |||| | Sbjct 57661 AGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACC---GGGACGCTTGTTAC 57605 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 | || || | ||| ||||| || || |||| || | || | ||| || | |||||| | Sbjct 57604 CTCCTTGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAACGATACCGT 57545 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAA 81499 || | ||||| || || | || || || || | ||| | ||| ||| | Sbjct 57544 TCGAGTAGCCGTTAGTGCCGGCAATGTAGGAGCCTTTTGAGCGAATGTTGTGGATGTGGA 57485 Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559 ||||||| || || | | ||| || ||| ||||||| || | || || || || | Sbjct 57484 GACCGATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTGTCGTAGATGC 57425 Query 81560 CCTCGAT 81566 | ||||| Sbjct 57424 CTTCGAT 57418 >seq13 Length=562416 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||| | ||||| ||||| || | || | || | ||| Sbjct 424127 CTGACGGGTAAGACCATCACTTTGGAGGTCGAGTCTTCGGACACGATCGACAACGTCAAG 424186 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||| ||||||||||| |||||||| || || |||||| | || |||||||| Sbjct 424187 GCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGATCAACAGCGTTTGATCTTTGCTGGC 424246 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | | ||||| || ||||| Sbjct 424247 AAGCAGCTCGAGGACGGCAGGACCCTTGCGGACTA 424281 >seq6 Length=1191995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 || ||| ||| || || ||||| ||||| || |||||||| || |||||| | || Sbjct 859448 CGGCTCATAGCATTCGCATGTGTCGAAGGTATCTTCTTTTCCGGTTCATTCGCCGCCATC 859507 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 ||||||||||| ||||| ||||||||||| || || | ||||| || || || ||| | Sbjct 859508 TTCTGGCTAAAGAAGCGAGGCCTGATGCCGGGCTTGACCTTTTCCAATGAACTCATCAGT 859567 Query 64837 CGGGACGAGGG 64847 || || || || Sbjct 859568 CGTGATGAAGG 859578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310164746960