Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 118 9e-22 seq1 109 5e-19 >seq5 Length=1214282 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || | || || || | || Sbjct 997828 CATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTC 997769 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || |||||||| || || || || || || || Sbjct 997768 GGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCA 997709 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | |||||| || ||| || | |||||||| Sbjct 997708 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTACAA 997649 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||||||| | || | || | ||| |||| ||||| Sbjct 997648 CATCCAAAAGGAGTCGACCCTTCACCTCGTGCTTCGTCTGCGTGGTGG 997601 >seq1 Length=1765974 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || ||| | ||||| || |||| Sbjct 1746310 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCA 1746251 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || |||||||| || || || ||||| || ||| Sbjct 1746250 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 1746191 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||||| || | |||||||| || | ||||| Sbjct 1746190 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAAGA 1746156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918220596160