Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 109 4e-19 seq1 105 5e-18 >seq5 Length=1214282 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||||||||| || || ||||| | || || || || Sbjct 997830 AACATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCT 997771 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || ||| | || || || Sbjct 997770 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGAC 997711 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| || || ||||||| ||||| | | |||||| Sbjct 997710 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTAC 997651 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||| || Sbjct 997650 AACATCCAAAAGGAGTCGAC 997631 >seq1 Length=1765974 Score = 105 bits (116), Expect = 5e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||| | || || || ||||||||| | ||||| || || | Sbjct 1746310 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCA 1746251 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || ||||| ||| Sbjct 1746250 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 1746191 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| || ||||||||||| || || ||||| | ||||| |||| ||||||| Sbjct 1746190 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACATTAGCAGATTACA 1746133 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| ||||| || || || | Sbjct 1746584 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746525 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| ||| ||||| || ||| | || || ||||| Sbjct 1746524 GACACGATCGACAACGTAAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746465 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||| | || ||||||||||| || || || |||| ||||| || | ||| |||| Sbjct 1746464 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACGTTGGCCGACTACA 1746407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009464056764