Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 131 4e-25 seq1 129 1e-24 seq13 102 2e-16 >seq5 Length=1214282 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || ||||||| |||||||| || | || | || ||| Sbjct 997616 AGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCT 997675 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || ||||| ||||||||| Sbjct 997676 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 997735 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || || ||||| ||| Sbjct 997736 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 997795 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 997796 TTACCCGTGAGGGTCTTGACGAAAATCTGCATGTT 997830 >seq1 Length=1765974 Score = 129 bits (142), Expect = 1e-24 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || ||||||| || || || | |||||||| |||||||| || || ||||| | || | Sbjct 1746130 CACTGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCT 1746189 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||| || || ||||| ||||||||||||||||| ||| || || || |||| Sbjct 1746190 GTTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGT 1746249 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||| | || || || || |||||||||||||| ||||| ||||| Sbjct 1746250 CTGACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTT 1746295 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| ||||| | || | || ||||| |||||||| || || |||||||| || | Sbjct 1746945 CACTGTAGTCGGCAAGGGTACGACCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGGCGCT 1747004 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | ||||| || |||||||| ||||||||||||||||| ||| || ||||| || | Sbjct 1747005 GCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATCGTAT 1747064 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || | || || || | || || |||||||| || Sbjct 1747065 CGGAAGACTCGACCTCGAGGGTAATGGTCTTGCCGGT 1747101 >seq13 Length=562416 Score = 102 bits (112), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| || || | || || || || || |||||||| ||||| ||||| | || | Sbjct 424286 CACTGTAGTCCGCAAGGGTCCTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCT 424227 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 |||| || || |||||||| ||||||||||| ||||| ||| || ||||| |||| Sbjct 424226 GTTGATCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGT 424167 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 | || | || || || || ||||| ||||| ||||||| Sbjct 424166 CCGAAGACTCGACCTCCAAAGTGATGGTCTTACCCGTCA 424128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530695782902