Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 3e-11 >seq8 Length=1060936 Score = 84.2 bits (92), Expect = 3e-11 Identities = 263/405 (65%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002 ||||| ||| || ||||| || || ||||| | || |||||||||||| || | Sbjct 57821 ACATCCGACAACCCGGGGCACTCGGCAGGACACATGAGTGTCCAGTCACCATCCTCTTCG 57762 Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || || ||||| || | || || ||||| || ||| || | || || | | | | Sbjct 57761 ACGCGCTTCATGAACAAGTCGGGAATCCAAAGCGCATAGAACAAGTCGCGTGCGCGAACT 57702 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || || |||||| | |||||||| || | | || | |||||| ||| Sbjct 57701 TCTTCCTTGCCGTGATTCTTGCGCAAGTCGAGAAAGTCAAAGACGTCGGCATGCCAAGGT 57642 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || ||||| || || | | || || || || |||||||| ||||| | ||| | || Sbjct 57641 TCGAGATAGATGGCGAATGCACCGGGACGCTTGTTACCTCCTTGATCGACATAACGAGCT 57582 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 || | || | | | ||| |||| |||||||| || || || || || | | Sbjct 57581 GTAGCGTCGTATGCGCGAAGCATGGGAACGATACCGTTCGAGTAGCCGTTAGTGCCGGCA 57522 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 || || || ||| |||||| || ||| | || || || || ||| |||| Sbjct 57521 ATGTAGGAGCCTTTTGAGCGAATGTTGTGGATGTGGAGACCGATACCGCCGGCCGTCTTG 57462 Query 78303 GATATTAGAGCGCAACGT-TTCAATGTATCGTAGATACCCTCTAT 78346 || || | ||| | |||| || | || |||||||| || || || Sbjct 57461 GAGATCATAGCAC-ACGTCTTGAGCGTGTCGTAGATGCCTTCGAT 57418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668513449120