Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 192 1e-43 seq1 159 7e-34 seq13 156 9e-33 >seq5 Length=1214282 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || || || | || || |||||||||||||| || || Sbjct 997600 ACCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGC 997659 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || || || || ||||| ||||| | ||| || |||||| || Sbjct 997660 AAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGG 997719 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||||||||||| || || ||| | ||||| |||||||||| ||||| Sbjct 997720 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 997779 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||||||||| | ||||| ||||| |||||||| || Sbjct 997780 CTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATGTT 997830 >seq1 Length=1765974 Score = 159 bits (176), Expect = 7e-34 Identities = 142/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| || | |||||| || ||||| || || || ||||||||||| | ||| || | Sbjct 1746407 TGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746466 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| || |||||||||||||| || |||||||| |||||| | ||||| ||||| | Sbjct 1746467 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGG 1746526 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | ||||| ||||| ||||| ||||| || ||||||||||| || || |||||||| Sbjct 1746527 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 154 bits (170), Expect = 3e-32 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 |||| || || | ||||| ||||| || || || || ||||||||||||||||| |||| Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || ||||||||||||||||||||||| || || ||| | || || ||||| | Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTG 1746252 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | |||||||| | |||||||||||| || ||||| || || || || |||||||| Sbjct 1746253 ACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 150 bits (166), Expect = 4e-31 Identities = 140/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| ||||| || || || || || || || || ||||||||||| | ||| || | Sbjct 1746678 TGTAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746737 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| || |||||||||||||| || |||||||| || ||| | ||||| ||||| | Sbjct 1746738 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGG 1746797 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | ||||| ||||| ||||| ||||| || ||||||||||| || || |||||||| Sbjct 1746798 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 136 bits (150), Expect = 8e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| || || || ||||||||||| || || || || |||||||| | || |||| Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || |||||||||||||| || |||||||| || ||| | ||||| ||||| | Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAG 1745985 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | ||||| || || || || ||||| || || | ||||| ||||| |||||||| Sbjct 1745986 ATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 129 bits (142), Expect = 1e-24 Identities = 121/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| ||||| || || || || || || || || ||||||||||| | || || | Sbjct 1746948 TGTAGTCGGCAAGGGTACGACCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGGCGCTGCT 1747007 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| |||||||||||||||||||||||||| || || ||| ||||||| || || | Sbjct 1747008 GGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATCGTATCGG 1747067 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| ||||| || || ||||| || || Sbjct 1747068 AAGACTCGACCTCGAGGGTAATGGTCTTGCCGGT 1747101 >seq13 Length=562416 Score = 156 bits (172), Expect = 9e-33 Identities = 128/156 (82%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| ||||| || | ||| ||||| || || || || |||||||||||||| |||| Sbjct 424283 TGTAGTCCGCAAGGGTCCTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGTT 424224 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| |||||||||||||||||||| ||||| || || ||| | ||||| ||||||| Sbjct 424223 GATCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCG 424164 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077 ||| ||||| || | |||||| ||||||||||||| Sbjct 424163 AAGACTCGACCTCCAAAGTGATGGTCTTACCCGTCA 424128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738757425582