Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq1 109 4e-19 >seq5 Length=1214282 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| || ||||||||||||||||||||| || || ||| |||| || Sbjct 997618 CACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCTTC 997677 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | ||||||||| || | ||| | ||| ||||| || Sbjct 997678 AAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTG 997737 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || || ||||||| || || ||||| Sbjct 997738 GATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTT 997797 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||||||||| ||||| || |||||| || Sbjct 997798 ACCCGTGAGGGTCTTGACGAAAATCTGCATGTTG 997831 >seq1 Length=1765974 Score = 109 bits (120), Expect = 4e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||| |||||||| || | || || |||||||| || |||||||| | ||||| | Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 | |||| ||| | ||| ||||| ||| ||||| ||||| | | || ||||| | Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAG 1745985 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 1745986 ATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 104 bits (114), Expect = 2e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||| ||||| | ||| |||| || |||||||| ||||||||||| | |||||||| Sbjct 1746407 TGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746466 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCG 44278 |||| | ||| | ||| ||||| ||| ||||| ||| | | ||| | || |||||| Sbjct 1746467 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTT-TGCCTTTACGTTGTCGATCGTGTCG 1746525 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || ||||| | ||| || ||||| || || | ||||| || ||||| ||||| Sbjct 1746526 GATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||||||||| | |||||||||||| | ||| | ||| |||| Sbjct 1746699 CGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCCT 1746758 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||||| | | || ||||||| || || ||||| | ||| | Sbjct 1746759 TGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTGA 1746818 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || || | ||||| || ||||| ||||| Sbjct 1746819 TTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 ||||||| || | | ||| | || || |||||||| |||||||||||||||||||| | Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 | |||| || | ||| ||||| || ||||| ||| | | | || ||||| | Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTG 1746252 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||| || |||||||| || || | ||| || || ||||| ||||| Sbjct 1746253 ACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990255216361