Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 150 4e-31 seq1 127 5e-24 >seq5 Length=1214282 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||| | ||||| || || ||| Sbjct 997824 CAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCGGAC 997765 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| || || |||||||| |||||||| Sbjct 997764 ACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAGCAG 997705 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||| || | || ||||| ||||| ||| || Sbjct 997704 CGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTACAACATC 997645 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || || Sbjct 997644 CAAAAGGAGTCGACCCTTCACCTCGT 997619 >seq1 Length=1765974 Score = 127 bits (140), Expect = 5e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || || || || ||||| || || ||| Sbjct 1746040 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTTGAGGTCGAGTCATCTGAC 1745981 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||||||| || || |||||||| ||||| || Sbjct 1745980 ACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCAGACCAACAG 1745921 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||| || || || |||||||| ||||| | ||||| ||||| || Sbjct 1745920 CGCCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCCGACTA 1745868 Score = 118 bits (130), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| |||||||| || || ||| Sbjct 1746852 CAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCCGAC 1746793 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||||||| || || |||||||| || ||||| Sbjct 1746792 ACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAG 1746733 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || || ||||| ||||| || ||||| ||||| || | || ||||| || || Sbjct 1746732 CGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTTGCAGACTA 1746680 Score = 118 bits (130), Expect = 3e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || || ||||||||||| || || || || ||||| |||||||| Sbjct 1747104 CTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCCGATACGATCGATAACGTCAAG 1747045 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| || || || ||||| |||||||| || |||||||| |||||| Sbjct 1747044 GCCAAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTTATCTTTGCCGGA 1746985 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || ||||| ||||| || | || |||||||| || Sbjct 1746984 AAGCAGCTTGAAGACGGTCGTACCCTTGCCGACTA 1746950 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| |||||||| || || ||| Sbjct 1746581 CAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCCGAC 1746522 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||||||| || || |||||||| || ||||| Sbjct 1746521 ACGATCGACAACGTAAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAG 1746462 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || || ||||| ||||| || |||||||| || || | || | ||||| || Sbjct 1746461 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACGTTGGCCGACTA 1746409 Score = 96.9 bits (106), Expect = 8e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || || || |||||||| | || || || |||||| Sbjct 1746307 CAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCAGAC 1746248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 1746247 ACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAACAG 1746188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || | ||||| ||||| || |||||||||||||| | || | || ||||| Sbjct 1746187 CGTTTGATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACATTAGCAGATTA 1746135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730691047402