Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 seq1 105 6e-18 >seq5 Length=1214282 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || |||||| || ||||| || || | Sbjct 997601 CCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCA 997660 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| || || ||||| ||||| | || Sbjct 997661 AGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGG 997720 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || || | ||| | | | ||||| ||||| || Sbjct 997721 ATACCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 997779 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || |||||||| || ||||| ||||||||||||||||| Sbjct 997780 CTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATGTT 997830 >seq1 Length=1765974 Score = 105 bits (116), Expect = 6e-18 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||||| ||| || || | || |||||||||||||| || || || |||||||||||| Sbjct 1745868 TAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGG 1745927 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | || | | |||||||||| ||| | ||||| | ||| | | | ||||| Sbjct 1745928 TCTGGAGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGA 1745986 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| | ||| || || || || || || ||||| ||||| |||||||| Sbjct 1745987 TGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||||| | ||||| |||| ||||||||||||||||| || || || ||||| || Sbjct 1746409 TAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGA 1746468 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | || | | |||||||||| ||| | ||||| | ||| | | | |||||| Sbjct 1746469 TCAGGAGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGA 1746527 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| | ||| || || || || |||| ||||| || || |||||||| Sbjct 1746528 TGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| | ||||| || |||| || |||||||||||||| || || || ||||| || Sbjct 1746680 TAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGA 1746739 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | || | | |||||||||| ||| | ||||| | ||| | | | |||||| Sbjct 1746740 TCAGGAGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGA 1746798 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| | ||| || || || || |||| ||||| || || |||||||| Sbjct 1746799 TGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303809299600