Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq286 170 2e-37 seq2 136 4e-27 seq335 93.3 4e-14 >seq286 Length=987428 Score = 170 bits (188), Expect = 2e-37 Identities = 289/419 (69%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| ||||||||||||||| || || |||||||||| || ||||| || || ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 ||||||| || ||||| || |||||||| | ||| ||||| | ||| ||||||||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||||||||| || || || | ||||| || | || ||||| || | || | | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 |||| ||||||||| | |||| || ||||| |||| |||||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| | || | | | ||||| | || | || || |||||| || | Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||| ||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 833995 GAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCC 833936 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | || || ||||| | | || | ||| | || || ||||| || ||||| || Sbjct 833935 TCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATC 833877 >seq2 Length=2111947 Score = 136 bits (150), Expect = 4e-27 Identities = 301/446 (67%), Gaps = 18/446 (4%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| ||||| || ||||| ||| || ||||||||||| ||||| || || || ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 ||||| || ||||||||| || |||||||| ||||||||||| || ||||| || ||| Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCG--TTCGG--CGTA--CGTC 17128 ||||| ||||| || ||||| | |||||||| | | || | | | || | || Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 17129 GCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATC 17188 | |||| | | |||| | |||| || || |||| || ||||| |||| Sbjct 204107 GAATCTTCG------ACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACT 204160 Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATG 17248 ||||| | || ||||| | | ||| ||| | ||| | | || || |||||| Sbjct 204161 GTTTCAAGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATG 204220 Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308 || | || |||| || || | ||| || || ||||| || ||||| ||| | Sbjct 204221 AGCAAAGAATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAG 204280 Query 17309 CGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCG--CTAGATTTTCGTTCACG 17365 || || ||| | ||| || || |||| ||| | | ||||||||||||||| Sbjct 204281 CGCGCCTCCAGAGGTCCAACCTCGCA---AGAAAAGTTTTGAACGAGATTTTCGTTCACG 204337 Query 17366 ATGCCGTCGCTCGCGGCGAAAAACGC 17391 ||||| || |||||| ||||| || Sbjct 204338 ATGCCATCAGACGCGGCAAAAAAGGC 204363 >seq335 Length=51571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 297/449 (66%), Gaps = 20/449 (4%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| | ||| ||||| ||| ||| | || || ||||||||||| |||||||| || Sbjct 20026 AACAATAAACAGGCGAAGTCGGTATGAAGCCCTTCATCTCTGCTGATTAGTTCGTTCGAG 19967 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || ||||| || ||||| || |||||||| | |||| | | ||| || ||||| || Sbjct 19966 AAAGTCAAACCTGGCATAAGCCCCCGTTTCTTGATCCAATAGACCGCTGCAAACGATCCG 19907 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT-CGCGTC 17133 || ||||| || || ||||| | || || || | || || |||| | | || ||| Sbjct 19906 GAGAAGAAAATGCCTTCGACACAAGCGAAGGCCACCAAGCGCTCGGGAAAAATGCGGGTC 19847 Query 17134 --TTTGTTACGAATCCATTT--CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCG 17189 | ||| ||||||||| |||| || | ||||| | || ||| || | Sbjct 19846 GGATCGTT---AATCCATTTTAATGCA--CAGCCTGCTTTCCTCCGAATACAAGGAATGG 19792 Query 17190 TTTCTATGGCCTTAAATA-ATTTCTCTTTT---TCCTGTAGGTCGATTATATACGTATCG 17245 | || ||||| || || | || || || |||| ||| ||||| ||||| Sbjct 19791 TCTCGATGGCGTTGAACAGATAGGTCCGTTCGGCGCTGT--CCCGA--ATATAGGTATCT 19736 Query 17246 ATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAG 17305 || | | | || ||||||||| | ||||| || | ||||||| |||||||| Sbjct 19735 ATCAACAAGGAATATGCTTCGGAGTGAACATTCTCGATCATTGTCTGAAAACCGTAAAAA 19676 Query 17306 CATCGGGCTTCCGCT-ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 | ||||| ||| | || || | | | || |||||| ||||||||||| || Sbjct 19675 GAACGGGCCTCCCATGGACCGATCTCTCGAG-AAAACCGTTCCAAAAGATTTTCGTTGAC 19617 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 |||||||||| || || || || |||| Sbjct 19616 GATGCCGTCGGAGGCAGCAAAGAATGCCA 19588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543400431200