Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq286 150 2e-31 seq2 118 1e-21 seq308 102 1e-16 >seq286 Length=987428 Score = 150 bits (166), Expect = 2e-31 Identities = 311/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| | ||||||||||||| ||| | |||||||||| |||||| | || |||||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| || ||||| || || | ||| ||||| || ||||| || ||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 |||||||| || ||||| || || |||||||||| || | ||| || | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 24420 || || | || || | | || | ||| || | || ||| || | || Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 || |||| |||| ||||| || || || || |||||||| || ||||| | | | Sbjct 833995 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 833938 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||||| | ||| ||||| |||||| | ||| | | || || || || || || | Sbjct 833937 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 833878 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 | ||| ||||| || || | ||||| ||||||||| Sbjct 833877 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 833838 >seq2 Length=2111947 Score = 118 bits (130), Expect = 1e-21 Identities = 222/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 |||||||||||||| || | || |||||||| || | |||||||| | |||||| || Sbjct 203957 CCCTCGTCTCTACTGATGAGCTCATTGGAAAATGTTAAACCGGGCATCAAGCCACGTTTC 204016 Query 24216 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 || | ||||||||||| ||| || || |||||||| || || ||||| || ||||| Sbjct 204017 TTCAACCAAAATATGGCCGCGAAAGAACCAGAAAAAAATATGCCTTCGACACAGGCAAAC 204076 Query 24276 GCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCATGTATCCACTTTTGAGCCCAATC 24331 || | || | |||| ||| ||| | || | | ||| |||||||| Sbjct 204077 GCCACGAGGC-GACTCCCGAACGAAACGGTGGAATCTTCGACCCATCGCAATGCCCAATC 204135 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 24391 ||||| ||||| | || || ||| || | || |||||||||| | || ||| Sbjct 204136 CGCCTTTTTTTTAATGCAGTCCACTGTTTCAAGCGCGTTAAAGAGATGGGCTTGTTCTCG 204195 Query 24392 ACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCA 24449 | |||||||| || || || || | ||||| ||| |||| ||||||| |||||| Sbjct 204196 GGTGTCTTTAACGTAGGTGTCGATGAGCAAAGA--ATATGTTTCTGAATGAACGTTTTCG 204253 Query 24450 ATGGCCATTTGAAATCCGTAGAA 24472 || || || || |||||||| Sbjct 204254 ATCATGATCTGGAAACCGTAGAA 204276 >seq308 Length=957167 Score = 102 bits (112), Expect = 1e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || ||||| ||||| || || || |||||||| | ||| ||| || || || Sbjct 618962 AAAAGGTCAGGGATCCACAGCGCGTAGAAGAGATCTCTTGCCCTAGCTTCTTCCTTGCCA 619021 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| | ||||||||| | | | ||||| |||||| ||||| | ||| || Sbjct 619022 TGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGATC 619081 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | |||| || || ||||||||||| ||||| | ||| | ||||||| || |||| Sbjct 619082 GCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCGGTGGCATCATAA 619141 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 | | | |||||| | || ||||| || |||||||||||| Sbjct 619142 GCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 619185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719076683200