Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq286 289 3e-73 seq2 167 2e-36 seq1 134 1e-26 seq113 123 3e-23 seq335 114 1e-20 seq69 96.9 4e-15 seq284 82.4 8e-11 >seq286 Length=987428 Score = 289 bits (320), Expect = 3e-73 Identities = 408/571 (71%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||||||||| ||||| | ||||| ||||||| Sbjct 832621 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTTTGGACTGCAGAGGAAATGGACCTC 832562 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | |||||| ||| | |||||||||||||||||||||||| Sbjct 832561 TCGAAAGATATTCATGACTGGACAACCCGCCTTAACGACAACGAGCGCCATTTCATCTCC 832502 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || || || ||||| ||| || || || ||||||||||| || |||||||| Sbjct 832501 CATGTCCTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGCGC 832442 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | | ||||| || || |||||||| || || ||||| ||||| || ||| ||| Sbjct 832441 TTTTCCAACGAGGTCCAAGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGATG 832382 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA---CGTGCGCTCTTCG 116929 |||||| | ||||| || | ||||||| ||||||||||| || | | | || | Sbjct 832381 GAGAACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGCTGCC 832322 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || || || | || ||||| | ||||| || ||||| ||||| ||||| Sbjct 832321 GAACGCGAGTACC---TTTTCGACGCCGTGGAGACCATTCCGTGTGTCAAGCGCAAGGCA 832265 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| ||| ||||||| ||| | || | | | || || || ||| ||||||| Sbjct 832264 GACTGGGCACTGAACTGGATCTCCGACCGACGGTCAACTTTTGGTGAACGCTTGGTGGCG 832205 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || || || || ||| ||||||| |||||| |||||| |||| || ||| | ||| Sbjct 832204 TTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGGATGAAG 832145 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || ||| | ||||| ||||||||||| ||| |||||||| | | ||||| || Sbjct 832144 AAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGACGAAGGA 832085 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| ||||||||| || | || |||| Sbjct 832084 ATGCACACCGACTTTGCATGCCTTCTCTTCA 832054 >seq2 Length=2111947 Score = 167 bits (184), Expect = 2e-36 Identities = 393/582 (68%), Gaps = 35/582 (6%) Strand=Plus/Minus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-- 116694 ||||| |||||||| |||||||| || || || ||||| || || || | ||||| Sbjct 204491 TGTGGTTGATGTACAAGAAGGCCGAAGCTTCTTTTTGGACAGTTGACGAACTCGACCTCC 204432 Query 116695 -GTCCAAGGACACGAGCGACTGGGAG---CG-CTTGAACGACAACGAGCGCCATTTCATC 116749 ||| | | | |||| |||||| || ||| | | ||| ||||| |||||| Sbjct 204431 GGTCTGAT--CTTG-GCGATTGGGAGTTTCGTCTTTCAAG-CAAGGAGCGTTTCTTCATC 204376 Query 116750 AAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809 | | ||| || |||||||| ||||| || |||||||| ||||| ||||| || | Sbjct 204375 ACCCGCGTCCTCGCCTTTTTTGCCGCGTCTGATGGCATCGTGAACGAAAATCTCGTTCAA 204316 Query 116810 CGTTTCGCTCAGGAGGTGCAGGTGGCC-----GAGGCGCGGTGCTTCTACGGCTTTCAGA 116864 || || ||||| ||| | |||||||| | ||||||||| || |||| Sbjct 204315 AACTTTTCTTGCGAGGT-----TGGACCTCTGGAGGCGCGCTCCTTCTACGGTTTCCAGA 204261 Query 116865 TCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT 116924 || || || ||||| || || |||| ||||| ||||||||||| ||||| Sbjct 204260 TCATGATCGAAAACGTTCATTCAGAAACATATTCTTTGCTCATCGACACCTACGTTAAAG 204201 Query 116925 -CTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG 116983 | | ||| | |||| || | | || ||||| | || || || ||| | ||| | Sbjct 204200 ACACCCGAGAACAAGC-CCATCTCTTTAACGCGCTTGAAACAGTGGACTGCATTAAAAAA 204142 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC--TTCG---GCGAG- 117037 ||||| || ||||| |||| ||| ||| ||| || || |||| | ||| Sbjct 204141 AAGGCGGATTGGGCATTGCGATGGGTCGA------AGATTCCACCGTTTCGTTCGGGAGT 204088 Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 ||||| ||||| || || ||||| ||| | || ||||| || |||||| |||||| Sbjct 204087 CGCCTCGTGGCGTTTGCCTGTGTCGAAGGCATATTTTTTTCTGGTTCTTTCGCGGCCATA 204028 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 |||||| | |||||||| ||| | |||||||| | || || ||| ||||||||| Sbjct 204027 TTTTGGTTGAAGAAACGTGGCTTGATGCCCGGTTTAACATTTTCCAATGAGCTCATCAGT 203968 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 || |||||||| ||||| || ||||| ||| | ||||| Sbjct 203967 AGAGACGAGGGCTTGCATACGGATTTTGCTTGTCTTTTGTTC 203926 >seq1 Length=2331425 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||||||| |||| |||||| || || Sbjct 482364 ATGCAGATCTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 482305 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| ||||| | ||||| || || || || | || || Sbjct 482304 GATACTATCGACAACG-TCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCA 482246 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||| | || ||||| ||||| || || | |||||||| |||||||| Sbjct 482245 ACAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTATCGGACTACAA 482186 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | ||||| || || || | ||| || | || || Sbjct 482185 CATCCAGAAGGAGTCGACGCTCCACCTGGTTCTCCGCCTGCGCGGTGG 482138 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || ||||| | || Sbjct 482592 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTCGAGTCTTCC 482533 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| |||| || || |||||||| || | || ||| Sbjct 482532 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 482473 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| || || || |||| || || || || |||||| Sbjct 482472 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTTTCTGATTACAAC 482413 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||||| || || || | ||| || | || ||| Sbjct 482412 ATCCAGAAGGAGTCAACGCTCCACCTCGTTCTTCGCCTGCGTGGTGGC 482365 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | ||||||||||| || |||| ||| || || ||||| || |||| || | Sbjct 483001 GCATCCCGCCCGACCAGCAACGTCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGACGAA 482942 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGG 40912 |||| ||||| ||||| ||||||||| | || || || || || |||| || | | Sbjct 482941 CCCTATCTGACTATAACATTCAGAAGGAGTCGACCCTTCACCTTGTCCTGCGTCTGCGTG 482882 Query 40913 GCGGC 40917 ||||| Sbjct 482881 GCGGC 482877 >seq113 Length=2004859 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||||||||| || ||||| ||| |||| |||||| | | Sbjct 833527 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTCGAGGTCGAATCATCG 833468 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 833467 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 833408 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || || ||||| || |||| |||||| || ||||||||| Sbjct 833407 CAGCGCTTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGCACTCTTTCGGACTACAAC 833348 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||||||| ||| || || || Sbjct 833347 ATTCAGAAGGAGAGCACTCTTCACCT 833322 >seq335 Length=51571 Score = 114 bits (126), Expect = 1e-20 Identities = 304/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||||||||| || || || ||| |||||||||||||||||| ||||| | || || Sbjct 19581 CACGTGCTGGCATTCTTTGCTGCCTCCGACGGCATCGTCAACGAAAATCTTTTGGAACGG 19640 Query 116813 TTCGCTCAGGAG----GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 || ||| ||| || || ||| ||||| || | || ||||| ||||||| Sbjct 19641 TTTTCTCGAGAGATCGGTCCA--TGG--GAGGCCCGTTCTTTTTACGGTTTTCAGACAAT 19696 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 || ||||| || ||||| ||| ||||| | || || || || | || | Sbjct 19697 GATCGAGAATGTTCACTCCGAAGCATATTCCTTGTTGATAGATACCTATATTCGGGA--C 19754 Query 116929 GGAGGAGAA--GCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGT-CAAAGAGAA 116985 | | ||| | | | |||| |||||||||||||| || || || | | || ||| Sbjct 19755 AGCGCCGAACGGACCTATCTGTTCAACGCCATCGAGACCATTCCTTGTATTCGGAG-GAA 19813 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCTGG 117044 || | || || | ||||| || | || || ||| ||||||| ||| Sbjct 19814 AGCAGGCTGTGCATTAAAATGGATTAACGATCCGACCCGCATTTTTCC-CGAGCGCTTGG 19872 Query 117045 TGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGC 117104 |||||||||| ||||| ||| | ||||| || || || || || | | |||| Sbjct 19873 TGGCCTTCGCTTGTGTCGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCGGTCTATTGGA 19932 Query 117105 TCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACG 117164 |||||||||| || || ||||| || |||||||| ||||| || ||| ||| || | Sbjct 19933 TCAAGAAACGGGGGCTTATGCCAGGTTTGACTTTCTCGAACGAACTAATCAGCAGAGATG 19992 Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 | || || ||| |||||| |||||||| ||||| Sbjct 19993 AAGGGCTTCATACCGACTTCGCCTGTTTATTGTTC 20027 >seq69 Length=731732 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | |||||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 268847 ATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACC 268788 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||||||||| |||||| |||| || || Sbjct 268787 CTCAGCGACTACAACATCCAAAAGGAGTCCACTCTCCA 268750 >seq284 Length=318945 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | ||||| || || || |||| || ||||| ||||| || |||| ||||| Sbjct 114407 ATCCCGCCCGACCAACAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACT 114466 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||||||||||||||||||| | || || || Sbjct 114467 CTCAGCGACTACAACATCCAGAAGGAGTCGACACTTCA 114504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217010318400