Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 seq113 96.9 2e-15 >seq1 Length=2331425 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||||||| | || || ||||| ||||||||||| || Sbjct 482138 CCACCGCGCAGGCGGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAT 482197 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || | || || | ||||||||| || |||||||| || || || || | ||| Sbjct 482198 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGA 482257 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||| | | | | || | ||||| |||||||| Sbjct 482258 ATCCCT-TCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGAC 482316 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || |||||||| || ||||||||||| Sbjct 482317 TTCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAGATCTGCAT 482364 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34182 CCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCA 34241 ||| ||| | || || || ||||| || ||||| || |||| ||| |||| |||| Sbjct 481929 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 34242 ACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTA 34301 | ||||| || || || ||||| ||||||||||| || | || |||||| || | Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 482048 Query 34302 TCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGC 34361 |||| ||| | || | | |||| ||| | || ||||| |||| |||||| || || | Sbjct 482049 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 482108 Query 34362 CGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||| ||||| ||||| ||||| Sbjct 482109 CCGTCAAAGTCTTCACGAAGATTTGCAT 482136 >seq113 Length=2004859 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34180 CACC-AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 |||| || || | |||| || ||||| ||||| || ||||| || || |||| | Sbjct 833600 CACCGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCT 833659 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 | | ||||||||| ||||| || | ||||||||||| ||| | | ||||||||| Sbjct 833660 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCT 833719 Query 34299 CTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||| |||||||| | | | | || | |||| ||| ||||| || | || || || Sbjct 833720 GGATC-TTTGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTC 833778 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || |||||||||||||| Sbjct 833779 TTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 833810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34182 CCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCA 34241 ||||||| | ||| || || ||||| ||||||||||| || || || |||| || | Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 34242 ACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTA 34301 |||||| || || ||||| | ||||| ||||| ||| | | ||||||||| | Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAA 833439 Query 34302 TCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGC 34361 |||| ||| | || | | || | || | |||||||| || | || ||||| || | Sbjct 833440 TCTTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTC 833499 Query 34362 CGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || || || || ||||| Sbjct 833500 CCGTGAGCGTCTTGACGAAAATTTGCAT 833527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070661270400