Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq113 118 8e-22 seq1 114 1e-20 seq69 87.8 1e-12 >seq113 Length=2004859 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| ||| || |||||||||||||||||||||||||| || ||| |||| || | Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||| ||||||||||| || || | ||||||||||||| || Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAA 833439 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | ||||| || ||||| | |||||| ||||| | Sbjct 833440 TCTTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTC 833499 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || ||||| || || |||||||| Sbjct 833500 CCGTGAGCGTCTTGACGAAAATTTGCAT 833527 Score = 114 bits (126), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || ||| |||||||||||||||||| || || |||| | || || Sbjct 833884 ACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 833943 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| || ||||||||||| ||||| ||||||||||| || || | ||||||||||||| Sbjct 833944 CAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTG 834003 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | | ||| ||| || |||| ||| || ||||| Sbjct 834004 GATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTT 834063 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || || || || ||||| Sbjct 834064 TCCCGTCAGTGTTTTGACGAAAATCTGCAT 834093 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||||||||| || ||| || ||| |||| || || || Sbjct 833608 TGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGC 833667 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| ||||| ||||| ||||| || || | ||||||||||||| | | || Sbjct 833668 TTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGA-TCTT 833726 Query 45254 TGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | | | |||| ||| ||||| | |||||| ||||| || || Sbjct 833727 TGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGT 833786 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 833787 GAGGGTCTTGACAAAGATCTGCAT 833810 >seq1 Length=2331425 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||||||| || ||||||||||||||||| ||||| || || || |||| |||| Sbjct 481929 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||| || ||||| || || | ||||| ||||| ||||| | |||||||| ||| || Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 482048 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | ||| | ||| || |||| || |||||||| | Sbjct 482049 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 482108 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| ||||||||| ||||||||||| Sbjct 482109 CCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| |||||||| || || || |||| || ||||| Sbjct 482389 GTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTG 482448 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || |||||||| | |||||||| ||| ||| || Sbjct 482449 CTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTT 482508 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | |||| | ||| || |||| || ||||||||||| || Sbjct 482509 TGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGT 482568 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||| Sbjct 482569 CAATGTCTTCACAAAAATCTGCAT 482592 >seq69 Length=731732 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || |||||||||||| | || |||| | || ||| Sbjct 268744 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCC 268803 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| |||| ||||| ||||||||||| Sbjct 268804 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 268844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073562907140