Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq286 156 5e-33 seq2 125 9e-24 seq308 107 2e-18 >seq286 Length=987428 Score = 156 bits (172), Expect = 5e-33 Identities = 312/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||||||||||||| ||||| |||||||||| |||||| | || || ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || ||||| || || | ||| ||||| || || || || || Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 |||||||| || ||||| || ||||||||||||| || | || || | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAA 33867 ||||| | || || | | || | ||| || | || |||||| | || Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || |||| |||| ||||| || || || || || ||||| || ||||| | | | Sbjct 833995 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 833938 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||||| | ||||||||| |||||| | ||| | | || || || || || |||| Sbjct 833937 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 833878 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 | ||| ||||| || || | ||||| ||||||||| Sbjct 833877 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 833838 >seq2 Length=2111947 Score = 125 bits (138), Expect = 9e-24 Identities = 296/441 (67%), Gaps = 11/441 (2%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| || ||||| |||| |||||||||||||| || | || || ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | |||||||| | |||||| || || | ||||||||||| ||||| || || Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC-TCTCTCCA--TAACCGGCG 33749 ||||| || || ||||| || ||||| || | || | ||| | | || ||| | Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || | | ||| |||||||| ||||| ||||| | || || ||||| Sbjct 204107 GAATCTTCGACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTTTCA 204166 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAA 33867 | || |||||||||| | || ||| | |||||||| || || ||||| | ||| Sbjct 204167 AGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGCAAA 204226 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || ||| |||| ||||||| |||||| || ||||| || |||||||| | | | Sbjct 204227 GA--ATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGCGCG 204284 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCC 33985 |||| | || || | |||| ||| || | | |||||| ||||| || || Sbjct 204285 CCTCCAGAGGTCCAACCTCGCAAGAAAA--GTTTTGAACGAGATTTTCGTTCACGATGCC 204342 Query 33986 ATCACTGGCTGCAAAAAACGC 34006 |||| || |||||||| || Sbjct 204343 ATCAGACGCGGCAAAAAAGGC 204363 >seq308 Length=957167 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 || || ||||| ||||| || || || |||||||||| ||| ||| || || || Sbjct 618962 AAAAGGTCAGGGATCCACAGCGCGTAGAAGAGATCTCTTGCCCTAGCTTCTTCCTTGCCA 619021 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 |||||| | ||||||||| | | | ||||| |||||| ||||| | ||| || Sbjct 619022 TGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGATC 619081 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | |||| || || ||||||||||| ||||| | ||| | ||||||| || |||| Sbjct 619082 GCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCGGTGGCATCATAA 619141 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 | | | |||||| | || || ||||| ||||||||| || Sbjct 619142 GCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 619185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814923275200