Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq286 149 6e-31 seq2 145 7e-30 >seq286 Length=987428 Score = 149 bits (164), Expect = 6e-31 Identities = 312/462 (68%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || ||| || ||||| || || || ||||||| ||| || || ||||| ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 ||||| | || ||||| | || ||||| || ||||| ||||| | ||||| || ||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTG 11797 ||||||||||| || |||||||| ||||| || |||| | ||| || | | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 ||| || ||||||||| |||||||||||||| || | ||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || |||| || | || || ||| ||| ||||| | || |||| Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATC-CTT---GATGTAGCCATCGATAAG 834000 Query 11918 C----TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 | |||| |||| ||||| ||||| ||||| |||||||| |||||||| | || Sbjct 833999 CAACGAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACG 833940 Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033 ||||| | ||| || || || |||| ||||| | | ||||| |||||||| || Sbjct 833939 CGCCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCC 833880 Query 12034 ATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 ||| | ||||| || || || | ||| |||||| || Sbjct 833879 ATCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 833838 >seq2 Length=2111947 Score = 145 bits (160), Expect = 7e-30 Identities = 253/364 (70%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| | ||| |||||||| ||| || || ||||||||||| || || ||||| ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 |||||||| ||||||||||| || ||||| || | ||||||||| || || || |||||| Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC-TTTCTCCA--TATACCTTG 11797 ||||| ||||| || || ||| ||||| || || | | || | | | || || Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTG 204106 Query 11798 --TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855 | | | | |||| |||||||| || || ||||| | ||| |||| ||||| Sbjct 204107 GAATCTTCG--ACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTTT 204164 Query 11856 CTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATA 11915 | | |||||||| | ||| || |||| | ||| | || || || || || | | Sbjct 204165 CAAGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGCA 204224 Query 11916 AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTG 11975 || ||| |||||||||||| ||||| || || || || || ||||| | || | Sbjct 204225 AAGAATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGCGCG 204284 Query 11976 CCTC 11979 |||| Sbjct 204285 CCTC 204288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522808769600