Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq113 96.9 3e-15 seq2 96.9 3e-15 seq286 87.8 2e-12 seq1 84.2 2e-11 >seq113 Length=2004859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || ||||||||||||||| | |||| | ||| |||||||| || || Sbjct 833614 GTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCC 833673 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||| ||||| || || || || || || ||||| ||| ||| ||| Sbjct 833674 GCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTG 833733 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | ||| | ||||| || || | || Sbjct 833734 ACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTC 833793 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 833794 TTGACAAAGATCTGCATA 833811 >seq2 Length=2111947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/196 (74%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 52870 GACGCTTTACCCGTATCATTGTTGGGCATGAACGC-GACCATGATGTGCGAGTACATCGA 52928 || || ||||| ||| | ||| | ||||||||||| |||| | ||| ||||||||| Sbjct 203790 GATGCGTTACCTGTAGCTTTGATTGGCATGAACGCCGACC-TCATGAAACGGTACATCGA 203732 Query 52929 GTTTGTTGCGGACAGACTGTTGA-TGCAGCTCG--GTCAGCCGAAATACTATAATGCGCG 52985 |||||| || ||||||||||||| ||| ||| | ||| || ||| | ||| ||| | Sbjct 203731 GTTTGTAGCTGACAGACTGTTGACTGC-GCTTGACGTC--CCAAAACATTATCATG-TTG 203676 Query 52986 TAACCCCTTTTCGTTT-ATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGA 53044 || ||||||| ||| ||| ||| || || ||| | || ||||| |||||||| |||| Sbjct 203675 CAAACCCTTTTGATTTCATGGACATGATTTCACTCCAAGGGAAAACCAACTTTTTTGAGA 203616 Query 53045 GACGTGTGGGCGAGTA 53060 ||| || | ||| || Sbjct 203615 AACGAGTAGCCGAATA 203600 >seq286 Length=987428 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 52550 TTCCGTGTGT---GCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAAC-GACAAA 52605 |||||||||| |||||| || || |||||| |||| |||||| || ||| Sbjct 832287 TTCCGTGTGTCAAGCGCAA---GGCAGACTGGGCACTGAACTGGATCTCCGACCGACGGT 832231 Query 52606 GCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGT 52665 | ||||||| ||||| |||| ||||||||| || ||||| | || || ||||| Sbjct 832230 -CAACTTTTGGTGAACGCTTGGTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGC 832172 Query 52666 AGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGC 52725 ||| ||| | || || | || || | ||| | ||||| ||||| || ||| | Sbjct 832171 TCTTTCGCGTCCATCTTCTGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCC 832112 Query 52726 AACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 || ||| | || |||||||||||||||||||| || ||||| || Sbjct 832111 AATGAGCTCATTAGCCGCGACGAAGGAATGCACACCGACTTTGCATG 832065 >seq1 Length=2331425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||| | ||| | ||| ||||| || || ||||| ||||| Sbjct 482365 GCCACCACGCAGGCGAAGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 482424 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| ||||| || || || || | || || || |||||||||||||| Sbjct 482425 AAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGG 482484 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | |||| || | | || | ||||||| | ||| | Sbjct 482485 AATGCCCTCCTTATCC-TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGA 482543 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | ||||||||||||||| || || || || || |||||| Sbjct 482544 CTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATA 482593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061891728000