Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq286 161 1e-34 seq2 123 2e-23 >seq286 Length=987428 Score = 161 bits (178), Expect = 1e-34 Identities = 380/567 (67%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 || ||| || ||||| || | |||||| |||| ||||||||| || || |||||||| Sbjct 834290 TAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAAAATGT 834231 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | || ||||| | || ||||| || | ||| ||||||| ||||| ||||| ||||| Sbjct 834230 CAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCAGAAAA 834171 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||| || || || |||||||| || | || ||||| |||| | || | ||||| Sbjct 834170 GAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGTTTGTC 834111 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||||||| |||||| |||| ||| || || || || || || || || Sbjct 834110 TGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCTATGGC 834051 Query 14108 ATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 | || | | || ||| | | | |||| ||||| ||| ||||| || | Sbjct 834050 GTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTG--ATGTAGCCATCGATAAGCAACGAA 833993 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 ||| |||| || || || || ||||| || ||||| ||||| ||| | | || || Sbjct 833992 TACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCCTCG 833933 Query 14226 G--ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| || ||||| |||| |||||| | | || || || || || ||||| Sbjct 833932 GGTACC--TGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCTG 833875 Query 14284 TAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 || ||||| || || || ||| | ||||| || |||| |||| |||||| || Sbjct 833874 AGGCCGCAAAGAAAGCAAGAACATGCGAT--ATAAAATACCGCTCATCATGGTTGAGATT 833817 Query 14342 ---TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 ||||| || || || | ||||| || | ||| ||| ||||||| || || Sbjct 833816 GAAGTTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGGC 833757 Query 14399 GACAGCTTTTTTATACATTACCCATAT 14425 |||||| || || | | |||||| Sbjct 833756 TTGAGCTTTCTTGTAGAATTGCCATAT 833730 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 13905 CTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAAT 13964 ||||| || || || ||||| || | || |||||||| ||||| || || | ||| || Sbjct 832098 CTAATGAGCTCATTGGAAAAAGTCAGGCCAGGCATCAAGCCTCGCTTCTTCATCCAGAAG 832157 Query 13965 ATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT 14024 || | || || || || || ||||| || || ||||| ||||||||||| | || ||| Sbjct 832158 ATGGACGCGAAAGAGCCCGAGAAGAAGATGCCTTCAACAGCAGCAAACGCCACCAAGCGT 832217 Query 14025 TCTCCAAA 14032 || ||||| Sbjct 832218 TCACCAAA 832225 >seq2 Length=2111947 Score = 123 bits (136), Expect = 2e-23 Identities = 290/435 (67%), Gaps = 12/435 (3%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||| ||| | |||||| |||||||| || || || || ||||||||||| Sbjct 203935 ACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAAAATGTTAA 203994 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || |||||||| || ||||| || ||||||||||| || || || || || ||||| || Sbjct 203995 ACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCAGAAAAAAA 204054 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG--ATGCTTTTTTGTTC 14048 ||| || || || |||||||| | | || || |||| | | | | ||| Sbjct 204055 TATGCCTTCGACACAGGCAAACGCCACGAGGCGACTCCCGAACGAAACGGTGGAATCTTC 204114 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | | |||| ||||| || | ||||||||||| | |||| |||||||| || Sbjct 204115 G--ACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTTTCAAGCGCG 204172 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 ||||| | || | | ||| || | || ||| || || || || || ||| Sbjct 204173 TTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGCAAAGAATAT 204232 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC--- 14225 |||| || || | |||||| || ||||| ||||| || ||| | | || ||| Sbjct 204233 GTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGCGCGCCTCCAGA 204292 Query 14226 -GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| || || | |||| ||| | | |||||| || || || |||||| Sbjct 204293 GGTCCA----ACCTCGCAAGAAAAGTTTTGAACGAGATTTTCGTTCACGATGCCATCAGA 204348 Query 14285 AGCTGCAAAAAATGC 14299 || |||||||| || Sbjct 204349 CGCGGCAAAAAAGGC 204363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725961156000