Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq113 82.4 6e-11 >seq1 Length=2331425 Score = 109 bits (120), Expect = 4e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 42902 CCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCA 42961 |||| || | ||||||||||| || | ||||||||| ||||| ||||| |||| |||| Sbjct 481929 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 42962 ATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG- 43020 |||| || |||||||| || | ||||| || || | || | || || || || ||| Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATC-CTGA 482047 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | | || || || ||| || || || |||||| || | ||| || || ||| Sbjct 482048 ATCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTT 482107 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||| ||||| || |||||||| Sbjct 482108 CCCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | || | |||| || |||||| || | |||||||| || Sbjct 482365 GCCACCACGCAGGCGAAGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 482424 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||| |||||||| ||||| | ||||| ||||||| || Sbjct 482425 AAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGG 482484 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || |||| || | ||||| || | | |||||| || ||||| Sbjct 482485 AATGCCCTCCTTATC-CTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGA 482543 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| || || || ||||| | || ||||||||||| ||||| Sbjct 482544 CTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 482592 >seq113 Length=2004859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||||||||||| || | ||||| || || | || || |||| || | || || || Sbjct 833330 AGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGAGCTGCTTCCC 833389 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTT 43030 ||||||||||| |||||||| || | || | ||| || || || ||| ||| | | | Sbjct 833390 AGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTC-CTGAATCTTCGCCT 833448 Query 43031 TGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAG 43090 |||| || | | ||||| | ||||| || | || || || ||||| || || | Sbjct 833449 TGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTCCCGTGAGCG 833508 Query 43091 TTTTCACAAAAATTTGCAT 43109 | || || ||||||||||| Sbjct 833509 TCTTGACGAAAATTTGCAT 833527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368019699720