Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq286 84.2 2e-11 seq1 82.4 8e-11 >seq286 Length=987428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 ||||| | ||||| || ||||||||||| |||||||| | || || || || Sbjct 832228 ACTTTTGGTGAACGCTTGGTGGCGTTTGCTGCTGTTGAAGGCATCTTCTTCTCGGGCTCT 832169 Query 50464 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50523 || || |||| || | || || | |||| | ||||| ||||| || ||| ||| Sbjct 832168 TTCGCGTCCATCTTCTGGATGAAGAAGCGAGGCTTGATGCCTGGCCTGACTTTTTCCAAT 832109 Query 50524 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567 ||| | ||| |||||||||||||||||||| |||||||| || Sbjct 832108 GAGCTCATTAGCCGCGACGAAGGAATGCACACCGACTTTGCATG 832065 >seq1 Length=2331425 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || ||||||||||| | || | ||| |||||||| || || Sbjct 482396 GTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCCG 482455 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | || || || |||||||||||||| ||||| || || || ||| ||| || Sbjct 482456 GCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTTGCCTTG 482515 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | |||||||||||||||||| Sbjct 482516 ACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGTCAATGTC 482575 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 482576 TTCACAAAAATCTGCATA 482593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012245188800