Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq335 96.9 3e-15 >seq335 Length=51571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 343/530 (65%), Gaps = 7/530 (1%) Strand=Plus/Minus Query 13172 CCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTT 13231 ||||||||||| || ||||| ||||| || || || | ||| ||||||||||| ||||| Sbjct 19996 CCTTCATCTCTGCTGATTAGTTCGTTCGAGAAAGTCAAACCTGGCATAAGCCCCCGTTTC 19937 Query 13232 TTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAAC 13291 || |||||| | | || |||||||| || || || || || ||||| || || || Sbjct 19936 TTGATCCAATAGACCGCTGCAAACGATCCGGAGAAGAAAATGCCTTCGACACAAGCGAAG 19877 Query 13292 GCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTT 13351 || | ||| | || | | | | | | | ||||| ||| || ||| | Sbjct 19876 GCCACCAAGCGCTCGGGAAAAATGCGGGTCGGATCGTTAATCCATTTTAATGCACAGCCT 19817 Query 13352 GCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTA 13411 ||||| || || || | || || ||||| || | ||| | ||| Sbjct 19816 GCTTTCCTCCGAATACAAGGAATGGTCTCGATGGCGTTGAACAGATAGGTCCGTTCGGCG 19757 Query 13412 CTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATC 13471 ||||| |||||| ||||||||||| ||| ||| ||| || |||| ||| || ||| Sbjct 19756 CTGTCCCGAATATAGGTATCTATCAACAAGGAATATGCTTCGGAGTGAACATTCTCGATC 19697 Query 13472 GCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT--ACCTGAACTTCGGAGTAAAATC 13529 | | || ||||| |||||| | | ||||| || ||| || || ||| |||| | Sbjct 19696 ATTGTCTGAAAACCGTAAAAAGAACGGGCCTCCCATGGACC-GATCTCTCGAG-AAAACC 19639 Query 13530 TTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCT 13589 ||| | |||||||| || || ||||| |||||||| || || || | ||| Sbjct 19638 GTTCCAAAAGATTTTCGTTGACGATGCCGTCGGAGGCAGCAAAGAATGCCAGCACGTGTG 19579 Query 13590 TAATAAAttttttttCGTTTTCTGACA-ACTTT--AACCAATCTGGAAAATCTTTTGATA 13646 | ||| | | || | | ||| | || || |||||| | ||||| | Sbjct 19578 ACAAAAAATGCCTGTCATCGTTTGATAGACGTTGGTCCCAATCCGCCAAATCGGAACGAA 19519 Query 13647 AATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 ||| | || |||||||||||||| || | | || |||||||||||| Sbjct 19518 GATCAAGTTCGTCAACGGTCCAAAACGACGACTCCGCTTTCTTATACATC 19469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980614116680