Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq113 95.1 1e-14 seq1 95.1 1e-14 >seq113 Length=2004859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||||||||||| ||||||||||| || | | | || ||| ||||||| ||||| Sbjct 833325 TGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTG-CGCCCGTCCTCGAGCTG 833383 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | |||| || ||||| || || || | || ||||||||| ||| || Sbjct 833384 CTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTT 833443 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || || || | || || ||||| || ||||| || || || Sbjct 833444 CGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTCCCGT 833503 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || ||||| ||||| Sbjct 833504 GAGCGTCTTGACGAAAATTTGCAT 833527 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| |||||||| ||||| | | | || ||| ||||||| |||||||| || || Sbjct 833619 CTCCTTCTGAATGTTATAATCGGAAAGAGTG-CGCCCGTCCTCGAGCTGCTTGCCCGCGA 833677 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGC-TTGA-- 48650 | || ||||||||||| || || | || ||||||||| || || ||| |||| Sbjct 833678 AGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTT-TGCTTTGACG 833736 Query 48651 TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | | || ||||| |||| ||||| ||||| || || || || || ||||| || | Sbjct 833737 TTGTCG--ATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCT 833794 Query 48711 TCACAAAAATCTGCAT 48726 | ||||| |||||||| Sbjct 833795 TGACAAAGATCTGCAT 833810 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| |||||||||||||||| | | || || | || |||||||| Sbjct 833891 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG-CGACCATCTTCCAGCTG 833949 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || ||||| || || || | || ||||||||| || || Sbjct 833950 CTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTT 834009 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | |||||||| | ||||| || | || ||||| || || || Sbjct 834010 GGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTTTCCCGT 834069 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||||||||| Sbjct 834070 CAGTGTTTTGACGAAAATCTGCAT 834093 >seq1 Length=2331425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||||| | ||| ||||||| || ||||| ||| || | Sbjct 482401 CTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 482460 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||||| ||||||||||| || | | ||||| ||| ||| || ||||| | Sbjct 482461 AATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATT 482520 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| || | || || || || ||||| | || ||||| Sbjct 482521 GTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCAC 482580 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 482581 AAAAATCTGCAT 482592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249454440340