Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq278 140 5e-29 seq1 107 3e-19 seq291 105 1e-18 >seq278 Length=373228 Score = 140 bits (154), Expect = 5e-29 Identities = 124/153 (81%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 263096 GCCAARCGCCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACGAAGCCCGCTAT 263038 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| || |||||| | ||||| | |||| ||||||| Sbjct 263037 TCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATTTCTGGTCTCATCTACGAAGAGAC 262978 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||||| |||||||||||||||||| ||| ||| Sbjct 262977 TCGTGGTGTTTTGAAGATCTTCCTTGAGAACGT 262945 Score = 127 bits (140), Expect = 3e-25 Identities = 121/153 (79%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 240956 GCCAARCGCCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACGAAGCCCGCTAT 241014 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| || |||||| | ||||| | |||| || |||| Sbjct 241015 TCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATTTCTGGTCTCATCTACGAGGAGAC 241074 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| |||| ||||||||||||| ||| ||| Sbjct 241075 CCGTGGTGTTCTGAAGATCTTCCTTGAGAACGT 241107 >seq1 Length=2331425 Score = 107 bits (118), Expect = 3e-19 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || || |||||||| ||||| ||||| || ||||||||| ||||||| ||| |||| ||| Sbjct 1597078 GCCATTCGTCGTCTTGCTCGCCGTGGAGGTGTCAAGCGTATCTCTGGTTTGATCTACGAA 1597137 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTA 16605 || | |||| ||| | |||||||||||| | | || |||| ||| | | || | ||| Sbjct 1597138 GAAACCCGTGGCGTTCTCAAGATCTTCCTCGAAAATGTCATCCGTGACTCCGTTAC-CTA 1597196 Query 16606 TACCGAGCACGCTAAACG 16623 |||||||| |||||||| Sbjct 1597197 CACCGAGCATGCTAAACG 1597214 >seq291 Length=245826 Score = 105 bits (116), Expect = 1e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||||||||||| || || |||||||| || |||||| | || Sbjct 96331 AGGCATCACGAAGCCTGCCATCCGTCGTCTTGCCCGCCGTGGTGGTGTAAAGCGTATTTC 96390 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||||||||||| |||| || | ||||| |||||| ||| || || | Sbjct 96391 TGGCCTCATCTATGAAGAGACACGTGGCGTCCTCAAGATTTTCCTCGAGAATGTCATTCG 96450 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || || || ||||||||||| ||||| || Sbjct 96451 GGACTCTGTCACTTATACCGAGCATGCTAAGCG 96483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074889135620