Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq286 150 2e-31 seq2 122 1e-22 seq308 107 2e-18 >seq286 Length=987428 Score = 150 bits (166), Expect = 2e-31 Identities = 311/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| | ||||||||||||| ||| | |||||||||| |||||| | || |||||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || ||||| || || | ||| ||||| || ||||| || ||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 32828 |||||||| || ||||| || || |||||||||| || | || || | | Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 |||| ||||| ||| |||||||||| || || || | ||||| || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 32946 || || | || || | | || | ||| || | || ||| || | || Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 || |||| |||| ||||| || || || || |||||||| || |||||| | | | Sbjct 833995 GA--ATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCG 833938 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||||| | ||| ||||| |||||| | ||| | | || || || || || || | Sbjct 833937 CCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCAT 833878 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 | ||| ||||| || || | ||||| ||||||||| Sbjct 833877 CTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATA 833838 >seq2 Length=2111947 Score = 122 bits (134), Expect = 1e-22 Identities = 230/334 (69%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 |||||||||||||| || | || |||||||| || | |||||||| | |||||| || Sbjct 203957 CCCTCGTCTCTACTGATGAGCTCATTGGAAAATGTTAAACCGGGCATCAAGCCACGTTTC 204016 Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 || | ||||||||||| ||| || || |||||||| || || ||||| || ||||| Sbjct 204017 TTCAACCAAAATATGGCCGCGAAAGAACCAGAAAAAAATATGCCTTCGACACAGGCAAAC 204076 Query 32802 GCAATAAGTC-TCTCTCCA--TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG 32858 || | || | ||| | | || ||| | || | | ||| |||||||| Sbjct 204077 GCCACGAGGCGACTCCCGAACGAAACGGTGGAATCTTCGACCCATCGCAATGCCCAATCC 204136 Query 32859 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 32918 ||||| ||||| | || || ||| || | || |||||||||| | || ||| Sbjct 204137 GCCTTTTTTTTAATGCAGTCCACTGTTTCAAGCGCGTTAAAGAGATGGGCTTGTTCTCGG 204196 Query 32919 CTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAA 32976 | |||||||| || || || || | ||||| ||| |||| ||||||| |||||| | Sbjct 204197 GTGTCTTTAACGTAGGTGTCGATGAGCAAAGA--ATATGTTTCTGAATGAACGTTTTCGA 204254 Query 32977 TGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 | || || || ||||||||| | | ||||| Sbjct 204255 TCATGATCTGGAAACCGTAGAAGGAGCGCGCCTC 204288 >seq308 Length=957167 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || || ||||| ||||| || || || |||||||| | ||| ||| || || || Sbjct 618962 AAAAGGTCAGGGATCCACAGCGCGTAGAAGAGATCTCTTGCCCTAGCTTCTTCCTTGCCA 619021 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 |||||| | ||||||||| | | | ||||| |||||| ||||| | ||| || Sbjct 619022 TGATTCTTCCGTAAATCGAGGAAATCAAACACATCAGCATGCCAGGGTTCGATGTAGATC 619081 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | |||| || || ||||||||||| ||||| | ||| | ||||||| || |||| Sbjct 619082 GCGAATGCTCCTGGTCGCTTGTTTCCTCCTTGATCGACGTAGCGAGCGGTGGCATCATAA 619141 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCC 63306 | | | |||||| | || ||||| || |||||||||||| Sbjct 619142 GCACGAAGCATTGGCACTATGCCATTTGAATAACCATTGGTCCC 619185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629307064000