Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq113 96.9 3e-15 >seq1 Length=2331425 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| |||| || || ||||||| ||||||| || || || Sbjct 482364 ATGCAGATCTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 482305 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| | ||| |||||| ||||| ||||||||||| ||||| ||| Sbjct 482304 GATACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAA 482245 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||||||||| || | || |||| |||||| | || ||||| Sbjct 482244 CAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTATCGGACTACAAC 482185 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || Sbjct 482184 ATCCAGAAGGAGTCGACGCTCCA 482162 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | ||||| | ||||| ||||| || Sbjct 482136 ATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCG 482077 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| || || || || ||||| |||||||| Sbjct 482076 GATACGATTGACAATGTGAAGGCGAAGATTCAG-GATAAGGAGGGCATTCCTCCTGACCA 482018 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || ||||| || || | || ||| || |||||||| Sbjct 482017 GCAGCGCCTCATCTTTGCCGGGAAGCAATTGGAGGACGGGCGTACTTTGTCGGATTACAA 481958 Query 25178 TATTCAAAAAGA 25189 |||||| || || Sbjct 481957 TATTCAGAAGGA 481946 >seq113 Length=2004859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || ||||||| | ||||| ||||| || Sbjct 834093 ATGCAGATTTTCGTCAAAACACTGACGGGAAAGACCATCACCCTGGAAGTCGAGTCCTCG 834034 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| ||||| || || || || ||||||||| Sbjct 834033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAA 833974 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | ||||||| ||||||| | |||||||| Sbjct 833973 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAAC 833914 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| || || Sbjct 833913 ATTCAGAAGGAGTCCACTCTTCA 833891 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||| || |||| || || || || Sbjct 833527 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTCGAGGTCGAATCATCG 833468 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | || || | ||| ||||| || || || || |||||| Sbjct 833467 GACACTATCGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAGGGTATCCCCCCTGAC 833411 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || || | || || | |||||| | || ||| Sbjct 833410 CAACAGCGCTTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGCACTCTTTCGGACTAC 833351 Query 25176 AATATTCAAAAAGA 25189 || ||||| || || Sbjct 833350 AACATTCAGAAGGA 833337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326204397100