Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 145 6e-30 seq113 107 2e-18 >seq1 Length=2331425 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | || || || || |||| || ||||| ||| || || Sbjct 482364 ATGCAGATCTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 482305 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||||| ||||||||||| || ||||| || |||||| Sbjct 482304 GATACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAA 482245 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| ||| | |||||| |||||| | || || |||||| Sbjct 482244 CAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTATCGGACTACAAC 482185 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | || ||||||| ||| Sbjct 482184 ATCCAGAAGGAGTCGACGCTCCACCTGGTTCTCCGCCTGCGCGGTGGT 482137 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || ||||| || ||| |||| || ||||| || | || Sbjct 482592 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACGATCACGCTGGAAGTCGAGTCTTCC 482533 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||| ||||| || |||||||| ||||| |||||||| Sbjct 482532 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCCGATCAG 482473 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| ||| || | || ||||||||| Sbjct 482472 CAGCGCCTAATTTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTTTCTGATTACAAC 482413 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 482412 ATCCAGAAGGAGTCAAC 482396 >seq113 Length=2004859 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || || || || |||| || ||||| || || | Sbjct 834093 ATGCAGATTTTCGTCAAAACACTGACGGGAAAGACCATCACCCTGGAAGTCGAGTCCTCG 834034 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || |||||||||||||| || || || ||| Sbjct 834033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAA 833974 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | || ||| ||||| | || ||||||||| Sbjct 833973 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAAC 833914 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 833913 ATTCAGAAGGAGTCCAC 833897 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || || || || || | || Sbjct 833810 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCGTCC 833751 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| ||| || || ||||||||||||||||| || || || Sbjct 833750 GACACCATCGACAACGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 833691 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||| | ||||| ||||| | |||||||| ||| Sbjct 833690 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACTCTTTCCGATTATAAC 833631 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 833630 ATTCAGAAGGAGTCTAC 833614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || | || || || || ||| | | Sbjct 833527 ATGCAAATTTTCGTCAAGACGCTCACGGGAAAGACCATTACCCTCGAGGTCGAATCATCG 833468 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| |||||||||||||| || || || ||| Sbjct 833467 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 833408 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | ||||| ||||| | || || |||||| Sbjct 833407 CAGCGCTTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGCACTCTTTCGGACTACAAC 833348 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 833347 ATTCAGAAGGA 833337 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || ||||| ||||| ||||| || |||||||| || ||| | || ||| || ||| Sbjct 834216 ATCCCGCCCGACCAACAGCGTCTGATCTTTGCCGGGAAGCAGCTCGAAGATGGGCGTACC 834157 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 |||| || ||||||||||| ||||| |||||| | ||| | || | || | ||||| Sbjct 834156 CTCTCAGACTACAACATTCAGAAAGAGTCCACCCTTCATCTTGTGCTCCGTCTTCGCGGC 834097 Query 22444 GGT 22446 ||| Sbjct 834096 GGT 834094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726260752100