Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 251 1e-61 seq1 179 7e-40 seq113 150 3e-31 seq225 129 1e-24 seq284 107 4e-18 seq36 102 2e-16 seq69 86.0 1e-11 >seq3 Length=892390 Score = 251 bits (278), Expect = 1e-61 Identities = 385/537 (72%), Gaps = 19/537 (4%) Strand=Plus/Plus Query 268268 TCGACATAGTCCCGCGCA---TGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAAC 268324 ||||| ||| || |||| || |||||||| || | ||| || | ||| |||||| || Sbjct 626938 TCGACCTAGATCCACGCACCGTGCCCCCAATCACGTTGTGCATCGAGGTTTCCGAGGTAC 626997 Query 268325 AGGCATTTCTGCTTGCCGAGCTTCA----CGCGTGCAAGACCGCGAGTGATTTTTCGGGT 268380 | ||| ||||||||||||| | ||| ||| | || || | || || | || Sbjct 626998 AAGCACGACTGCTTGCCGAGCGAGATATCCGCC-GCA-GCCCTCG--TTATCTTCCTCGT 627053 Query 268381 CACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAA 268440 |||||| ||| ||| || | || |||||||||||||| ||||| || ||||||||||| Sbjct 627054 CACGAATGTCCGGCCCCGGCGGGGACTCTCGTGGTTGAACAGGATCCCATTGCACGCGAA 627113 Query 268441 CATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGC 268500 ||||||||| ||||| |||||||| ||||| ||||||| ||| | | ||| || | Sbjct 627114 CATGCCATAGGCCTCGCGGTAGTTGACGACGATCCAGTAGGCATAGAGCTTGGCGCAGCC 627173 Query 268501 GTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCG--GACTTTG 268558 || ||||| || || | |||||||||||| | || || | ||||| ||| ||| Sbjct 627174 ATAGGGAGAGCGCGGGTAGAAGGGCGTCGTCTCGCTCTGTGG--TGTCTCGACGACCTTG 627231 Query 268559 CCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGT-TTTTTCGAGACCGCAGAT 268617 || | |||||||| || || |||||||||||| ||| || ||||| || |||||| | Sbjct 627232 CCGTAAAGCTCGGATGTGGACGCTTGGTAGAAC-TTGACGTGCTTTTCAAGTCCGCAGGT 627290 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 |||| || |||||||| || || || |||| ||| || ||||| | || || || | Sbjct 627291 ACGGACAGCGTCGAGCAAGCGCAGGGTGCCCAGGCCGTCAACGTCTCCAGTGTATTCGGC 627350 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 ||| ||||| || || | ||| || ||| || || ||||| || | ||| || | Sbjct 627351 CATTTCGAAAGAGACTTTGACGTGCGACTGAGCACCGAGGTTGTAGATCTCCGTAGGCTG 627410 Query 268738 GACCTGCTGC-ACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 ||| || ||| | ||| | ||||||||| || ||| | || || |||||||||| Sbjct 627411 GACTTG-TGCGATGATGTACACGAGGTTGGTGCTATCGCTCAGATCACCGTAGTGCA 627466 >seq1 Length=2331425 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| ||||| ||||| || |||||||| || || || Sbjct 482138 CCACCGCGCAGGCGGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAT 482197 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || ||||| | |||||| || || ||| Sbjct 482198 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGA 482257 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| || || ||||||||| ||||| || || | ||||| ||| Sbjct 482258 ATCCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACT 482317 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || || |||||||| |||||||| Sbjct 482318 TCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAGATCTGCAT 482364 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| ||||| ||||| || |||||||| ||||| || Sbjct 482366 CCACCACGCAGGCGAAGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAA 482425 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | || || ||||| ||| Sbjct 482426 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGA 482485 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || ||||||||||||||||| ||||||||||| | || || ||| Sbjct 482486 ATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACT 482545 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || || | ||||| || || |||||||| Sbjct 482546 TCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 482592 Score = 136 bits (150), Expect = 7e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 ||||||| || ||| ||| || || || || ||||| || | || | ||| || || | Sbjct 481929 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||||||||| || ||||| | || ||||| || |||||||| ||||| || |||| Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 482048 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| || || || || || | || || |||||||| ||||| || |||| Sbjct 482049 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 482108 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||||| ||||| || ||||| Sbjct 482109 CCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| ||||| ||| |||||||| || | ||||| || || Sbjct 483053 CCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGGATTCGACCTCG 483112 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 483113 AGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 483156 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || |||||||| || |||||||| || ||||| Sbjct 482594 CCACCGCGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 482653 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||||||| || Sbjct 482654 AGAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGTTGGTCGGGAGGG 482713 Query 68355 AT 68356 || Sbjct 482714 AT 482715 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || || ||||| || ||||| || |||||||| | ||| || || || Sbjct 482773 CCTTCCTTATCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCCGATGACTCAACCTCG 482832 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| || || || || ||||||||||||||||| |||||||| Sbjct 482833 AGGGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 482876 >seq113 Length=2004859 Score = 150 bits (166), Expect = 3e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68254 CCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 ||| ||| || ||| ||| || || ||||| || || || || || | ||| || || | Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||||| || || || | | |||||||| || || || || |||||||| |||| Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAA 833439 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| |||||||| ||||| ||||| | |||||| || || | ||| ||||| |||| Sbjct 833440 TCTTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTC 833499 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| ||||||||||| || ||||| Sbjct 833500 CCGTGAGCGTCTTGACGAAAATTTGCAT 833527 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| || || |||||||||||||| || || | ||| || || | |||| Sbjct 833608 TGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGC 833667 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | || ||||| || ||||| || |||||||| || |||||| Sbjct 833668 TTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTT 833727 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || |||||| ||||||||||| | || || || || | ||| || || || || ||| Sbjct 833728 GCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTG 833787 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || |||||||| Sbjct 833788 AGGGTCTTGACAAAGATCTGCAT 833810 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | || || ||||||||||| || ||||| || || ||| Sbjct 834095 CCGCCGCGAAGACGGAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 834154 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||||||||| || || || | ||||||||||| || Sbjct 834155 AGGGTACGCCCATCTTCGAGCTGCTTCCCGGCAAAGATCAGACGCTGTTGGTCGGGCGGG 834214 Query 68355 ATGC 68358 |||| Sbjct 834215 ATGC 834218 >seq225 Length=486143 Score = 129 bits (142), Expect = 1e-24 Identities = 329/495 (66%), Gaps = 32/495 (6%) Strand=Plus/Minus Query 268284 CATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGA 268343 |||| |||||||| || | ||| || | ||| |||||| ||| ||| ||||| |||| Sbjct 109081 CATGTCCCCAATCACGTTGTGCATCGAGGTTTCCGAGGTACAAGCACGATTGCTTTCCGA 109022 Query 268344 GC------TTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCAC 268397 || | || || || | || | || || | |||||||||||| ||| | Sbjct 109021 GCGAGATATCCATCCGC---AGCCATCG--TTATCTTCCTCGTCACGAACGTCCGGCCTC 108967 Query 268398 GTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCAC 268457 | | ||||||||||||||||| ||||| || |||||| |||||||| |||| ||| | Sbjct 108966 GGCGGGGGCTCTCGTGGTTGAACAGGATCCCATTGCACACGAACATGTCATACTTCTCGC 108907 Query 268458 GGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGAT 268517 ||||||| ||||| ||||||| ||| | | ||| || ||||||| | |||| | Sbjct 108906 GGTAGTTGACGACAATCCAGTAGGCATAGAGCTTGGCGCAGCCGTACGGTAAGTGTGGGT 108847 Query 268518 GGAAGG------GCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGG 268571 ||||| | ||||| | || || || ||| ||||| | ||||| | Sbjct 108846 CGAAGGGTGGGTGTGTCGTCTCGCTCTGTGGTGCCTCAACGACCTTGCCGTACAGCTC-G 108788 Query 268572 AGGTCGATGCTTGGTAGAACTTTGTTGT-TTTTTCGAGACCGCAGATTCGGATTGCCTCG 268630 |||| || |||||| |||| ||| || ||||| || || ||| | || | || ||| Sbjct 108787 AGGTGGACACTTGGTGGAAC-TTGACGTGCTTTTCAAGCCCACAGGTGCGAACGGCGTCG 108729 Query 268631 AGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGAC 268690 ||| | |||| || | | ||| | || || || | ||||||||| || Sbjct 108728 AGC----------TGCCCAGGCTGCCAAAGTCTCCAGTGTATTCAGCCATCTCGAAAGAG 108679 Query 268691 ACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC-AC 268749 |||| ||| || || || || ||||| || ||||| || | || || ||| | Sbjct 108678 ACCTTGACGTGCGATTGCGCACCGAGGTTGTAGACCTCCGTGGGCTGCACTTG-TGCAAT 108620 Query 268750 GATCTTCACGAGGTT 268764 ||| | ||||||||| Sbjct 108619 GATGTACACGAGGTT 108605 >seq284 Length=318945 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| || |||||||||||| ||||||||||| | || || || || Sbjct 114346 CCTTCCTTGTCTTGGATTTTTGCCTTGACGTTGTCGATGGTGTCAGACGACTCCACCTCA 114287 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||||||||||||||| || ||||| Sbjct 114286 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 114243 >seq36 Length=820370 Score = 102 bits (112), Expect = 2e-16 Identities = 147/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| | || ||| |||| || ||||| ||||||||||||||| Sbjct 152961 TAACGCCAGAGCATGTACTCGAGCGGCGTCTTGTCAAGATGGTTATCAATATGGTGGAAA 153020 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGC--CCCGAG 225095 || |||||||| ||||| | ||| || |||||| |||||||| | || ||| | Sbjct 153021 GCGTGCTGGGCGACGTAACCGATGACCAAGTTGGGGTGCTTCCAGATCTCGCCACCCCTG 153080 Query 225096 TCGGTTGTGCC---TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || || || || ||| |||||| || ||| || | |||||| | |||||| | Sbjct 153081 TTGG--GTTCCATATCTCCGATGAGGAGACGGACGAGGGTCGACTTGCCAGAACCATTAG 153138 Query 225153 GGCCAATCACGCCAATCCGGGATGA 225177 | |||| ||| ||| ||||| || Sbjct 153139 GTCCAAGGACGGCAACACGGGAGGA 153163 >seq69 Length=731732 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| ||||||||||| || ||| | Sbjct 268726 CCACCACGCAGACGAAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTG 268785 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| || Sbjct 268786 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 268845 Query 68355 AT 68356 || Sbjct 268846 AT 268847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618483104800