Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq286 190 4e-43 seq335 113 9e-20 >seq286 Length=987428 Score = 190 bits (210), Expect = 4e-43 Identities = 321/459 (70%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||| ||||| || || || ||||| |||||||| | | | || Sbjct 832495 CTCGCTTTCTTCGCAGCCTCGGATGGTATTGTCAACGAGAACCTTGTCGAGCGCTTTTCC 832436 Query 42483 AAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 || ||||| || | || ||||| || || ||||| |||||||| || || |||| Sbjct 832435 AACGAGGTCCA--AGTTGCCGAGGCTCGATGTTTCTATGGCTTCCAAATCATGATGGAGA 832378 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | ||||| ||| ||| | || || |||| || ||| ||| | | ||| | Sbjct 832377 ACATTCACTCAGAGACGTATTCGCTTCTCATCGACACCTATATCAAGGACGCTGCCGAAC 832318 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | || ||| | ||| ||||||| || || || ||||| ||||| ||||||| Sbjct 832317 GCGAGTACCTTTTCGACGCCGTGGAGACCATTCCGTGTGTCAAGCGCAAGGCAGACTGGG 832258 Query 42661 CGCTCAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 | || ||||||||| || |||||| |||| || || || | |||| || ||| Sbjct 832257 CACTGAACTGGATCTCCGA---CCGACGGTCAACTTTTGGTGAACGCTTGGTGGCGTTTG 832201 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || |||||||||||||||||| | ||||| |||||||||||| | ||| || Sbjct 832200 CTGCTGTTGAAGGCATCTTCTTCTCGGGCTCTTTCGCGTCCATCTTCTGGATGAAGAAGC 832141 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | | |||||| || || || || || || || ||||| ||| | ||||| || ||| Sbjct 832140 GAGGCTTGATGCCTGGCCTGACTTTTTCCAATGAGCTCATTAGCCGCGACGAAGGAATGC 832081 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 | | |||||||| ||||| || ||| |||||||||| Sbjct 832080 ACACCGACTTTGCATGCCTTCTCTTC---AGCCACCTCA 832045 >seq335 Length=51571 Score = 113 bits (124), Expect = 9e-20 Identities = 298/449 (66%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG--GCCACCAGGTTCA 42480 ||||| ||||| || ||||| |||||||| ||||| || || || | || ||| Sbjct 19587 CTGGCATTCTTTGCTGCCTCCGACGGCATCGTCAACGAAAATCTTTTGGAACGGTTTTCT 19646 Query 42481 TGAAAGA--GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 || ||| ||| || | ||||| || | || ||||| || |||| | || || Sbjct 19647 CGAGAGATCGGTCCA----TGGGAGGCCCGTTCTTTTTACGGTTTTCAGACAATGATCGA 19702 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 ||| || ||||| || | || || || | | || || || | ||| || ||| Sbjct 19703 GAATGTTCACTCCGAAGCATATTCCTTGTTGATAGATACCTATATTCGGGACAGCGCCGA 19762 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 || | | |||||||| ||||| ||||| || || || || || ||| || | ||| Sbjct 19763 ACGGACCTATCTGTTCAACGCCATCGAGACCATTCCTTGTATTCGGAGGAAAGCAGGCTG 19822 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGAC--GCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 || | || ||||| | ||| ||| ||| ||| |||| | |||| ||||| Sbjct 19823 TGCATTAAAATGGATTAACGATCC-GACCCGCATTTTTCC-CGAGCGCTTGGTGGCCTTC 19880 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | ||||| ||||| |||||||| || | || || | ||| ||| ||||| | Sbjct 19881 GCTTGTGTCGAAGGCATTTTCTTCTCCGGATCGTTTGCAGCGGTCTATTGGATCAAGAAA 19940 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || | ||||| || | || |||||||||||||| |||||||| || || ||||| Sbjct 19941 CGGGGGCTTATGCCAGGTTTGACTTTCTCGAACGAACTAATCAGCAGAGATGAAGGGCTT 20000 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||| ||||| ||||| | ||||||| Sbjct 20001 CATACCGACTTCGCCTGTTTATTGTTCTC 20029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335186558400