Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq113 125 7e-24 seq1 113 4e-20 seq286 91.5 1e-13 >seq113 Length=2004859 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | |||||| ||| || ||||| ||||| Sbjct 833897 GTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTTCCG 833956 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||| || || || || || |||||||||||| ||| || |||| Sbjct 833957 GCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 834016 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| |||| ||||||||| | ||| | || || || ||||| || Sbjct 834017 ACGTTG-TCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTTTCCCGTCAGTGT 834075 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || ||||||||||| Sbjct 834076 TTTGACGAAAATCTGCAT 834093 Score = 114 bits (126), Expect = 1e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| || |||||| | ||||| || || ||||| || || Sbjct 833614 GTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCC 833673 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| ||||||| |||||||| || || || || |||||||||||| ||| || ||| || Sbjct 833674 GCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTT-TGCTTT 833732 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| |||| |||||| | |||||| |||| ||| | || || || || || | Sbjct 833733 GACGTTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGG 833791 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || ||||| |||||||| Sbjct 833792 TCTTGACAAAGATCTGCAT 833810 >seq1 Length=2331425 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || |||||||| | || || || || || || || || Sbjct 482395 CGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCC 482454 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CT 127034 ||| | || | ||||||||||||||||| ||||||||||| ||| ||| | | || || Sbjct 482455 GGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC-TGAATCTTTGCCT 482513 Query 127035 TGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 ||| | |||| |||||| | | ||||||||| | || | ||| |||||||||| | Sbjct 482514 TGACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGTCAATG 482573 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || |||||||||||||| Sbjct 482574 TCTTCACAAAAATCTGCAT 482592 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||| || | ||| ||||| || || || ||||| || Sbjct 482138 CCACCGCGCAGGCGGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAT 482197 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || | || | || || ||||| || || Sbjct 482198 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGA 482257 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||||||| ||||| ||||| ||| || || | ||||| Sbjct 482258 ATCCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGT-CGATAGTATCGGAGGATTCGAC 482316 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| ||| | || ||||| ||||||||||| || || ||||||||| Sbjct 482317 TTCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACGAAGATCTGCATG 482365 >seq286 Length=987428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 47377 AGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAACGCGGAGATGATGAG 47434 |||||||| | || || ||||| | || || | || ||||| || || ||||| | Sbjct 831926 AGTTTTTCTCAGATGCACTGCCAGTGAAGCTCA--TTGGCATGAATGCTGACTTGATGTG 831869 Query 47435 AAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTA 47494 | ||||| |||||||| |||||||| || |||||| || || |||| | || Sbjct 831868 TCAATACATTGAATTTGTTGCCGACCGTCTCCTCGTTGCCCTCGGAAATGACAAGTTGTA 831809 Query 47495 CCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTT 47554 || | || |||||||| || ||| ||| || || || |||||||||| ||||| Sbjct 831808 TAACTCGACAAACCCATTCGACTTCATGGACATGATCTCACTGCAGGGCAAGACAAACTT 831749 Query 47555 TTTCGAGAAGCGCGTC 47570 ||||||||||||||| Sbjct 831748 CTTCGAGAAGCGCGTC 831733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498779121600