Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 seq113 127 5e-24 seq69 107 5e-18 >seq1 Length=2331425 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||| |||| | ||| | || || Sbjct 482381 AGAACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCC 482440 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||| || || |||||||| || ||| ||| || || ||| Sbjct 482441 TCGAGTTGCTTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCC 482500 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| |||||| | | || || |||| |||||||||| Sbjct 482501 TGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTC 482560 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||||||||| || Sbjct 482561 TTGCCGGTCAATGTCTTCACAAAAATCTG 482589 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||| || | |||||| | || || |||| ||||| ||||| || Sbjct 481945 CTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAATTGCTTCCCGGCAAA 482004 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 |||||| ||||||||||| ||| ||| || || ||||||||||| |||||| Sbjct 482005 GATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTCACATT 482064 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | || || | | || || ||||||||||||||||| ||||| | ||| ||||| Sbjct 482065 GTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTCAAAGTCTTCAC 482124 Query 199618 AAAAATTTG 199626 || ||||| Sbjct 482125 GAAGATTTG 482133 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | | || | ||||| Sbjct 482153 AGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGTGCGACCATCC 482212 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| || |||||||| || || || || ||| ||||| || Sbjct 482213 TCAAGCTGCTTGCCGGCAAAAATGAGACGTTGTTGATCAGGCGGAATCCCTTCCTTGTCT 482272 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| || || | | ||| || || | ||||| ||| Sbjct 482273 TGGATTTTCGCCTTGACGTTGTCGATAGTATCGGAGGATTCGACTTCGAGGGTGATGGTC 482332 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| || || || || Sbjct 482333 TTGCCTGTCAGAGTTTTGACGAAGATCTG 482361 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||| || ||||||||||| || | ||| ||||||| | || Sbjct 482884 CGCAGACGCAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGATAGGGTT 482943 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||| || || |||||||||||||||||||| ||||| |||||||| || Sbjct 482944 CGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGACGTTGCTGGTCGGG 482993 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| |||| ||||||||| | | ||| | ||||| Sbjct 482609 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCC 482668 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || ||||||||||| |||||||| || || || ||||| ||| Sbjct 482669 TCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGTTGGTCGGGA 482710 >seq113 Length=2004859 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| ||||| |||||||| || | |||||| |||| | ||| | |||||||||| Sbjct 833886 CAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCA 833945 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||||||||||||||| | ||||| ||||| || || || || ||||| | Sbjct 833946 GCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGA 834005 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| ||| || | ||| || | | || || |||| ||||| ||||| | Sbjct 834006 TCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTTTC 834065 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || ||||| || ||||| || Sbjct 834066 CCGTCAGTGTTTTGACGAAAATCTG 834090 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || || ||||| |||||||| || | ||| || || | | ||| | || || || ||| Sbjct 833605 AGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGC 833664 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || |||||||| | |||||||||||| || ||| || || ||||| ||| Sbjct 833665 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATC 833724 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 ||| || ||| |||| |||||| | | || || || | || || ||||| || Sbjct 833725 TTTGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCA 833784 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || Sbjct 833785 GTGAGGGTCTTGACAAAGATCTG 833807 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| ||||| |||||| || | ||||||||| | | ||| | || || || ||| Sbjct 833322 AGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGAGC 833381 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || || || | ||||| ||||| || || || || ||||||||| Sbjct 833382 TGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAATC 833441 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| || |||| ||||| | || ||| || || | || || ||||| ||| Sbjct 833442 TTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTCCC 833501 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| Sbjct 833502 GTGAGCGTCTTGACGAAAATTTG 833524 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||||||| |||||||||| | ||| | | ||||||||| | ||||| Sbjct 833964 ATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAACATTCAGAAG 833905 Query 200998 GAGTCTACTCTTCACCTTG 201016 ||||| ||||||||||||| Sbjct 833904 GAGTCCACTCTTCACCTTG 833886 >seq69 Length=731732 Score = 107 bits (118), Expect = 5e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| ||||||||||||| ||||||||| | || | ||||| Sbjct 268741 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 268800 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 268801 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGA 268842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916464322780