Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq113 132 5e-26 seq1 122 1e-22 seq284 89.7 6e-13 seq69 86.0 7e-12 >seq113 Length=2004859 Score = 132 bits (146), Expect = 5e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 46386 CCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGA 46445 |||| || | || |||||||| || || |||||||| || ||||||||| |||| |||| Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 46446 GCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 46505 ||||||| || || || ||||||||||| ||||| | || | | |||||||||| | Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAA 833439 Query 46506 TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565 ||||| ||||| | | | ||||| ||||| || || | || ||||| || | Sbjct 833440 TCTTCGCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTC 833499 Query 46566 CCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || |||||||| Sbjct 833500 CCGTGAGCGTCTTGACGAAAATTTGCAT 833527 Score = 132 bits (146), Expect = 5e-26 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||||| ||| |||||| || || || || ||||| ||||||||| |||| | Sbjct 833600 CACCGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCT 833659 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 ||||||||||||| ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 833660 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCT 833719 Query 46503 TGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 |||||| | ||| ||| | | | |||||| ||| || || || | || || || Sbjct 833720 GGATCTT-TGCTTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTC 833778 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || |||||||| ||||| Sbjct 833779 TTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 833810 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || |||||||| | || || |||||||| |||||||| Sbjct 833902 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 833961 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||| ||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 833962 GATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 834020 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || || || || |||| |||||||| || |||||||| ||||| | Sbjct 834021 TGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTTTCCCGTCAGTGTTTTGA 834080 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 834081 CGAAAATCTGCAT 834093 >seq1 Length=2331425 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || ||||| || |||| ||||| |||||||||||||| Sbjct 482401 CTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 482460 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| |||| || | || |||||| ||| ||||| ||||| | Sbjct 482461 AATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATT 482520 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| |||||| || ||||| |||| || || || Sbjct 482521 GTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGTCAATGTCTTCAC 482580 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 482581 AAAAATCTGCAT 482592 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| ||||| ||||| | || || |||||||||||||| || Sbjct 482173 CTCCTTCTGGATGTTGTAGTCCGATAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAA 482232 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || || | ||| | | |||||||| ||| ||| ||||| ||| Sbjct 482233 AATGAGACGTTGTTGATCAGGCGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGT 482291 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| ||||| || || | |||||||| ||||| ||||| ||||| | Sbjct 482292 TGTCGATAGTATCGGAGGATTCGACTTCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGA 482351 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 482352 CGAAGATCTGCAT 482364 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || |||||||| || || | ||| ||| |||| || | ||||| ||| Sbjct 481940 GTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCAATTGCTTCCCG 481999 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | |||||||||||| | || | || |||||| ||| |||||| ||| Sbjct 482000 GCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTC 482059 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||| || || || || |||| |||||| || || ||||||| || Sbjct 482060 ACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTCCCGTCAAAGTC 482119 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 482120 TTCACGAAGATTTGCAT 482136 >seq284 Length=318945 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| |||||||| |||| |||||||||||||| || || Sbjct 114493 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 114434 Query 46462 TATCAAGCGCTGCTGGTCGGCCGG 46485 |||| |||||| ||||||| ||| Sbjct 114433 GATCAGGCGCTGTTGGTCGGGCGG 114410 >seq69 Length=731732 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| || ||||| | || || ||||||||||||||||| Sbjct 268761 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 268820 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| ||||||||||||| Sbjct 268821 GATCAGACGCTGCTGGTCGG 268840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235997736800