Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq224 100 1e-15 seq113 98.7 4e-15 seq1 98.7 4e-15 >seq224 Length=1037722 Score = 100 bits (110), Expect = 1e-15 Identities = 241/364 (66%), Gaps = 3/364 (1%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| ||||||||||| || ||||| || || ||||| || || || ||| |||| Sbjct 147445 CTCCCGAAGAAATTTCTTCCATGGTCCTCCTCAAGATGAAGGAGACTGCTGAATCATATC 147504 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || ||| | |||| || |||||||| ||||| || || || || | || | Sbjct 147505 TCGGCGTTCCGACAAACAATGCTGTCATTACTGTCCCCGCGTACTTTAACGACTCCCAGC 147564 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || ||||| || || || | ||| | || || |||||||| || || | Sbjct 147565 GTCAAGCCACAAAAGACGCCGGCACGATCTCGGGTATGAACGTGCTTCGAATCATCAACG 147624 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 | || || || |||||| | || ||||| || | || || | | || | Sbjct 147625 AGCCCACGGCCGCTGCTATCGCCTATGGTCTCGACAA---GAAGGTTGTCGGCGAGCGCA 147681 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | || | | || ||| | |||||||||||| ||| |||| | || | ||||| | Sbjct 147682 ACGTTCTCATCTTCGATCTCGGTGGAGGAACTTTCGATGTTTCTCTCCTGACGATTGAGG 147741 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 | || | || || || ||||| || || ||||| ||||| || ||||| ||| | | Sbjct 147742 AGGGTATCTTCGAGGTTAAGGCTACTGCCGGAGATACACATCTGGGTGGTGAGGATTTCG 147801 Query 451602 ATAA 451605 |||| Sbjct 147802 ATAA 147805 >seq113 Length=2004859 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||||||||| || || || || || || || || || || || Sbjct 834093 ATGCAGATTTTCGTCAAAACACTGACGGGAAAGACCATCACCCTGGAAGTCGAGTCCTCG 834034 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || || || || || ||||| || || || ||||| ||| Sbjct 834033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAA 833974 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || || || |||||||| | ||| | | ||||| || Sbjct 833973 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAAC 833914 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| | || |||||| Sbjct 833913 ATTCAGAAGGAGTCCACTCTTCAC 833890 >seq1 Length=2331425 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| ||||| || || || || || || || || ||||| || Sbjct 482364 ATGCAGATCTTCGTCAAAACTCTGACAGGCAAGACCATCACCCTCGAAGTCGAATCCTCC 482305 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | || ||||| ||||| |||||||| ||||| ||||||||| Sbjct 482304 GATACTATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGGATTCCGCCTGATCAA 482245 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | ||||| | || || || ||||| ||||| | || | |||| || || Sbjct 482244 CAACGTCTCATTTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACCCTATCGGACTACAAC 482185 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 482184 ATCCAGAAGGAGTCGACGCTCCAC 482161 Score = 93.3 bits (102), Expect = 2e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || || || || || | || || || || || Sbjct 482136 ATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACGATCACGTTGGAAGTCGAGTCTTCG 482077 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| |||||||| || ||||||||||| || Sbjct 482076 GATACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAG 482017 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | ||||| ||| | || || || | |||||| ||||||| ||| Sbjct 482016 CAGCGCCTCATCTTTGCCGGGAAGCAATTGGAGGACGGGCGTACTTTGTCGGATTACAAT 481957 Query 391230 ATTGATAAGGATGCAACACTTCACTT 391255 ||| | ||||| || |||||||| Sbjct 481956 ATTCAGAAGGAGAGCACCCTTCACTT 481931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975709793276720