Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq224 188 9e-43 seq36 140 4e-28 >seq224 Length=1037722 Score = 188 bits (208), Expect = 9e-43 Identities = 292/416 (70%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || ||| | ||||| | ||| || || ||||| | | |||||| | ||| | | Sbjct 147862 GACATACCCTTCTTGTTTTTGCGCTTGAACTCCTGGGCGAAGTGGTTCACGAGGCGGTTA 147803 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| |||||||| || || || || || || || |||||||| Sbjct 147802 TCGAAATCCTCACCACCCAGATGTGTATCTCCGGCAGTAGCCTTAACCTCGAAGATACCC 147743 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | |||||||| || || || ||||| || || || ||||| ||| Sbjct 147742 TCCTCAATCGTCAGGAGAGAAACATCGAAAGTTCCTCCACCGAGATCGAAGATGAGAACG 147683 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | ||||| |||||||| || |||||||| || ||||| || || Sbjct 147682 TTGCGCTCGCCGACAACCTTCTTGTCGAGACCATAGGCGATAGCAGCGGCCGTGGGCTCG 147623 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || ||||| ||||| || | || || | || ||||| || ||||| || Sbjct 147622 TTGATGATTCGAAGCACGTTCATACCCGAGATCGTGCCGGCGTCTTTTGTGGCTTGACGC 147563 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA---CCG 7753 || || ||||||||||| || ||||| || | ||| || | || | || | ||| Sbjct 147562 TGGGAGTCGTTAAAGTACGCGGGGACAGTAATGACAGCAT---TGTTTGTCGGAACGCCG 147506 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| ||||| || | || ||||| ||| || ||||| || ||||| ||||| Sbjct 147505 AGATATGATTCAGCAGTCTCCTTCATCTTGAGGAGGACCATGGAAGAAATTTCTTC 147450 Score = 136 bits (150), Expect = 5e-27 Identities = 264/386 (68%), Gaps = 4/386 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 || || || ||||| | || ||||||||||| ||||| ||||| || || | || || Sbjct 148292 ATAGCCGCCTGGACGGCAGCACCGTATGCGACAGCCTCGTCGGGATTGATGCTCTTGTTG 148233 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG--ATTCGTGTCG 7139 | || || ||||| || | ||||| ||| |||| | |||| || || |||| Sbjct 148232 GGCTCCTTGCCGTTGAAGAAGTCCGA-CACA-AGCTTGACGATGCGGGGAATACGGGTCG 148175 Query 7140 ATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTG 7199 | |||||||| | ||||| || | || ||||| || |||||||| || || ||||| Sbjct 148174 AGCCACCGACGAGGACGATCTCGTGGACGTTCGACTTGTCGATCTTGGAATCGCGAAGGA 148115 Query 7200 TTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTG 7259 || ||||| || || | ||||| | ||| || |||||||| ||||| | Sbjct 148114 CCTTCTCGACGGGCTCGAGGGTGCCGCGGAAGAGATCCTGGCAGAGTTCCTCGAAACGGG 148055 Query 7260 CACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG 7319 ||||||| | || || ||||| || | || ||| | | || ||||| ||||||| | Sbjct 148054 CACGGGTGAGCGAGGTGTAGAAGTCGATACCCTCGAAGAGAGAGTCAATCTCAATGGAGG 147995 Query 7320 TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAA 7379 |||| | | || || | || ||||| || || || || || || || | ||| || | Sbjct 147994 TTTGAGTGGCGGAGGAGAGGGTGCGCTTGGCACGTTCGCAAGCAGTGCGGAGACGGCGGA 147935 Query 7380 GGGCACGCGGGTTACCGGAAATATCT 7405 ||||| ||||| |||||| |||| Sbjct 147934 CTGCACGAGGGTTGGCGGAAAGATCT 147909 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| | |||||||||||| ||| ||||| || || || ||||| ||||||||| | Sbjct 147190 GTGTTGTGGGGGTTCATGGCGACTTGATTCTTTGCGGCATCACCGATCAGACGTTCACTC 147131 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | | || | ||| || ||||| || || || || || |||||||| || || || Sbjct 147130 TCT---GAGAAAGAGACATAGGATGGAGTGGTCCGGTTACCCTGGTCGTTGGCGATGATC 147074 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || ||||| |||||||||||||| ||||| || Sbjct 147073 TCAACGCGATCGTTTTGCCAGACACCGACACA 147042 >seq36 Length=820370 Score = 140 bits (154), Expect = 4e-28 Identities = 194/269 (72%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||||||||||||||| || || || || || || || ||||| | || | |||| Sbjct 522692 TCGAAATCTTCACCACCCAAATGGGTGTCACCGGCAGTGGCCTTGACGGCGAACACACCT 522751 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | || |||||||| || || || ||||| || || || ||||| ||| Sbjct 522752 CCGCTGATGTTGAGCAGGGAAACATCGAAAGTTCCTCCACCGAGATCGAAGATGAGCACG 522811 Query 7577 TTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || || |||| ||| | || || ||||| || ||||| || || || || Sbjct 522812 TTCTTCTC--CG-CTTTTGTCTGACGGTCAAGGCCGTAGGCAATAGCAGCAGCTGTGGGC 522868 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| ||| | || ||||| || | | ||||| || || || | Sbjct 522869 TCGTTGATGATACGGAGAACATCAAGACCAGCGATGGCGCCAGCATCCTTGGTAGCCAGA 522928 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||||||||||||| ||||| || ||||| Sbjct 522929 CGTTGCGAATCGTTGAAGTACGCAGGGAC 522957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130100685600