Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq113 113 3e-20 seq1 102 5e-17 >seq113 Length=2004859 Score = 113 bits (124), Expect = 3e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34774 CCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 ||| ||||| ||||| || ||||||||||| ||||||||||| | || | || || | Sbjct 833320 CCAGGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGA 833379 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| || || ||||| || | || || ||||| | || | ||||||||||| || Sbjct 833380 GCTGCTTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAA 833439 Query 34894 TCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || | ||||| | ||| | || || |||| ||| ||||| Sbjct 833440 TCTTCGCCTTGAC--AT--TGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTC 833495 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||||||| ||||| || || || |||||| Sbjct 833496 TTTCCCGTGAGCGTCTTGACGAAAATTTGCATA 833528 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||| || ||||||||||| || || ||||| | || |||| || Sbjct 833884 ACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 833943 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || | || || ||||| | || | ||||||||||| Sbjct 833944 CAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTG 834003 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | || || ||| || || | ||| ||||| || Sbjct 834004 GATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCTT 834063 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || || || || || ||||||||| Sbjct 834064 TCCCGTCAGTGTTTTGACGAAAATCTGCATA 834094 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||| || ||||| | || | || || ||||| || || || || Sbjct 833620 TCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAG 833679 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| ||||| ||||||| Sbjct 833680 ATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTGACGTTG 833739 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| || || || || ||||| ||||| ||| Sbjct 833740 TCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACA 833799 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 833800 AAGATCTGCATA 833811 >seq1 Length=2331425 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| || ||||| || |||||||| Sbjct 482174 TCCTTCTGGATGTTGTAGTCCGATAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAA 482233 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || || |||| | ||| |||||||| || ||| |||||| Sbjct 482234 ATGAGACGTTGTTGATCAGGCGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTG 482293 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || |||| ||| ||||| || || || ||||| || || Sbjct 482294 TCGATAGTATCGGAGGATTCGACTTCGAGGGTGATGGTCTTGCCTGTCAGAGTTTTGACG 482353 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 482354 AAGATCTGCAT 482364 Score = 82.4 bits (90), Expect = 5e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || ||| ||||| | || || ||||| |||||||| || Sbjct 482914 TCCTTCTGAATGTTATAGTCAGATAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 482973 Query 34851 ATTAGTCGTTGCTGGTCTTGCGG 34873 || || ||||||||||| |||| Sbjct 482974 ATAAGACGTTGCTGGTCGGGCGG 482996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632254799520