Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq286 183 3e-41 seq2 122 1e-22 >seq286 Length=987428 Score = 183 bits (202), Expect = 3e-41 Identities = 383/568 (67%), Gaps = 7/568 (1%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| | |||||| ||||| || | |||||||||| ||| || | ||||| ||| Sbjct 834295 AACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCATTGGAA 834236 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| | |||||||| || || | ||| || | ||||||||| || ||||| || ||| Sbjct 834235 AATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAACGACCCA 834176 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||||||||| ||||| || || ||||| |||||||| | ||| || | | | || Sbjct 834175 GAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTTGAATGT 834116 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | ||||||||| || ||||||||||| || || | || || || || ||| Sbjct 834115 TTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATGGTGTCT 834056 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 || | | || || | ||||| | | ||| || | || |||| || | || Sbjct 834055 ATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATAAGCAAC 833996 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||| |||| ||||| ||||| || || || ||||| || || || | | || Sbjct 833995 GAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAACGCGCC 833936 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 || | || ||| ||||||| |||||| |||||||| | || || || || || ||||| Sbjct 833935 TCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATGCCATCT 833876 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCAT--CTGAGGTTA 19426 || ||||| || || | ||||| ||||||| | | |||| |||| || Sbjct 833875 GAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCATGGTTGAGATTG 833816 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 | | ||||| || | || | || | || | ||||||| ||||||| || || | Sbjct 833815 AAG--TTCCAGTCCACGAAGTCATGGGAAAGGTCAAGTTCTTCAGCTGTCCAGAATGAGG 833758 Query 19487 CCTCTGCTTTTTTATACATGTTCCATAT 19514 | | ||||| || || | | |||||| Sbjct 833757 CTTGAGCTTTCTTGTAGAATTGCCATAT 833730 Score = 122 bits (134), Expect = 1e-22 Identities = 365/559 (65%), Gaps = 7/559 (1%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| || || | ||| ||||| | || || | ||||| ||||| || | Sbjct 832065 CATGCAAAGTCGGTGTGCATTCCTTCGTCGCGGCTAATGAGCTCATTGGAAAAAGTCAGG 832124 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||||| |||| || || | |||||| || || || || || || || ||||| Sbjct 832125 CCAGGCATCAAGCCTCGCTTCTTCATCCAGAAGATGGACGCGAAAGAGCCCGAGAAGAAG 832184 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || || ||||| || || | | ||| ||| || | | | | | | || Sbjct 832185 ATGCCTTCAACAGCAGCAAACGCCACCAAGCGTTCACCAAAAGTTG-ACCGTCGGTCGGA 832243 Query 19141 -ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||| ||||||||||| || ||||| || ||||| || || ||||| | | | Sbjct 832244 GATCCAGTTCAGTGCCCAGTCTGCCTTGCGCTTGACACACGGAATGGTCTCCACGGCGTC 832303 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || || ||| || || | | || || | ||| | || || | | ||| | Sbjct 832304 GAAAAGGTACTCGCGTTCGGCAGCGTCCTTGATATAGGTGTCGATGAGAAGCGAATACGT 832363 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||||| ||||| || || || || || || || || ||||||| || || | | Sbjct 832364 CTCTGAGTGAATGTTCTCCATCATGATTTGGAAGCCATAGAAACATCGAGCCTCGGCAAC 832423 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || || || | |||| | ||||| | || || || || || ||||| ||||| Sbjct 832424 TTGGACCTCGTTGGAAAAGCGCTCGACAAGGTTCTCGTTGACAATACCATCCGAGGCTGC 832483 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA----TGTATTCC 19435 || || || | ||||| || ||||| || | || ||||| || ||| Sbjct 832484 GAAGAAAGCGAGGACATGGGAGATGAAATGGCGCTCGT-TGTCGTTAAGGCGGGTTGTCC 832542 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | |||| ||||||||| || | || | ||| || | |||||||| || ||||| || | Sbjct 832543 AGTCATGAATATCTTTCGAGAGGTCCATTTCCTCTGCAGTCCAAAACGACGCCTCAGCCT 832602 Query 19496 TTTTATACATGTTCCATAT 19514 | || ||||| | ||| || Sbjct 832603 TCTTGTACATTTGCCAGAT 832621 >seq2 Length=2111947 Score = 122 bits (134), Expect = 1e-22 Identities = 295/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| | ||| |||||||| ||| | |||||||||||||| || | ||||| ||| Sbjct 203927 AACAAAAGACAAGCAAAATCCGTATGCAAGCCCTCGTCTCTACTGATGAGCTCATTGGAA 203986 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||||||||| ||||||| || | ||| || ||||| ||||| | || || || ||| Sbjct 203987 AATGTTAAACCGGGCATCAAGCCACGTTTCTTCAACCAAAATATGGCCGCGAAAGAACCA 204046 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| ||||| ||||| || ||||| || || || | |||| ||| | | | Sbjct 204047 GAAAAAAATATGCCTTCGACACAGGCAAACGCCACGAGGC-GACTCCCGAAC--GAAACG 204103 Query 19132 TT---ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 | || | | |||| || ||||||||| ||||| ||||| | || || ||| Sbjct 204104 GTGGAATCTTCGACCCATCGCAATGCCCAATCCGCCTTTTTTTTAATGCAGTCCACTGTT 204163 Query 19189 TCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT 19248 || | | ||||| |||| | || || |||||||| || | || || | Sbjct 204164 TCAAGCGCGTTAAAGAGATGGGCTTGTTCTCGGGTGTCTTTAACGTAGGTGTCGATGAGC 204223 Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT 19308 ||| || |||||||||||| ||||| || ||||| || ||||| || | | Sbjct 204224 AAAGAATATGTTTCTGAATGAACGTTTTCGATCATGATCTGGAAACCGTAGAAGGAGCGC 204283 Query 19309 G-CTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 | || | | || || || | | |||| ||| || | |||||| || || || || Sbjct 204284 GCCTCCAGAGGTC-CAACCTCGCAAGAAAAGTTTTGAACGAGATTTTCGTTCACGATGCC 204342 Query 19368 ATCACTAGCTGCAAAAAATGC 19388 |||| || |||||||| || Sbjct 204343 ATCAGACGCGGCAAAAAAGGC 204363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106411037600