Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq286 145 9e-30 seq335 100 3e-16 >seq286 Length=987428 Score = 145 bits (160), Expect = 9e-30 Identities = 317/475 (67%), Gaps = 0/475 (0%) Strand=Plus/Minus Query 37161 TATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | ||||||| |||||| ||||| || || || || |||| ||| || | ||| Sbjct 834301 TATGTGAACAATAGACATGCGAAATCGGTGTGCAAGCCCTCGTCTCGACTAATAAGCTCA 834242 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || ||||| || | || ||||| | ||| | ||| || ||||| ||||||| ||||| Sbjct 834241 TTGGAAAATGTCAGGCCAGGCATAAGACCACGTTTCTTGATCCAGAATATTGAGGCAAAC 834182 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 || ||||||||||| || ||||| || || ||||| || || |||||| | || ||| Sbjct 834181 GACCCAGAAAAGAATATCCCTTCCACAGCAGCAAAGGCAACTAGACGTTCCGCAAAGGTT 834122 Query 37341 GAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 ||| | || |||||||||||| | |||||| || || || | || ||| Sbjct 834121 GAATGTTTGTCTGAAATCCATTTTAGAGCCCAATCAGCTTTGCGCTTGATGCAAGGAATG 834062 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 || || || || | || || | || | ||| | || || ||| || Sbjct 834061 GTGTCTATGGCGTCGAAAAGGTGGGCCCGCTCCTGCGGATCCTTGATGTAGCCATCGATA 834002 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 || || |||| |||| || || ||||| || || || ||||| ||||| || | Sbjct 834001 AGCAACGAATACGTTTCGGAATGGATATTCTCCATCATGATTTGAAAGCCATAGAAGGAA 833942 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 | || || | || || || || | ||||||| | | | ||| || || || || Sbjct 833941 CGCGCCTCGGGTACCTGCACTTCACCACAAAACCTTTCGACGAGGTTCTCGTTTACAATG 833882 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT 37635 ||||| || ||||||||||||||||||| |||||||| | ||||||| Sbjct 833881 CCATCTGAGGCCGCAAAGAAAGCAAGAACATGCGATATAAAATACCGCTCATCAT 833827 >seq335 Length=51571 Score = 100 bits (110), Expect = 3e-16 Identities = 349/536 (65%), Gaps = 9/536 (2%) Strand=Plus/Minus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||||||||| || || || ||| | ||||||||||| || || | ||| || || Sbjct 20026 AACAATAAACAGGCGAAGTCGGTATGAAGCCCTTCATCTCTGCTGATTAGTTCGTTCGAG 19967 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || || |||||||| | || | ||| || |||||| | | |||||||| ||||| Sbjct 19966 AAAGTCAAACCTGGCATAAGCCCCCGTTTCTTGATCCAATAGACCGCTGCAAACGATCCG 19907 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTG-AACT 37345 || |||||||| ||||| || || || || || | || | |||| || | Sbjct 19906 GAGAAGAAAATGCCTTCGACACAAGCGAAGGCCACCAAGCG-CTCGGGAAAAATGCGGGT 19848 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 ||| |||||||||| || || |||| || || ||| ||| || || Sbjct 19847 CGGATCGTTAATCCATTTTAATGCACAGCCTGCTTTCCTCCGAATACAAGGAATGGTCTC 19788 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 || || || || ||| || | ||| | || || ||||| ||||| || | || Sbjct 19787 GATGGCGTTGAACAGATAGGTCCGTTCGGCGCTGTCCCGAATATAGGTATCTATCAACAA 19728 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||| ||| ||||||| ||| || || | |||||||||| |||||| | | || Sbjct 19727 GGAATATGCTTCGGAGTGAACATTCTCGATCATTGTCTGAAAACCGTAAAAAGAACGGGC 19668 Query 37526 TTCAGAT-AATTGAACATCGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACTATCCCA 37583 || || | || | || | |||||| || ||| ||||| || || || || Sbjct 19667 CTCCCATGGACCGATC-TCTCGAGAAAACC-GTTCCAAAAGATTTTCGTTGACGATGCCG 19610 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA-- 37641 || || |||||||| || || || | | | |||||| || ||||| ||||||| Sbjct 19609 TCGGAGGCAGCAAAGAATGCCAGCACGTGTGACAAAAAATGCCTGTCATCGTTTGATAGA 19550 Query 37642 -ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | |||||| | ||| | ||||| ||| |||||||||||||| Sbjct 19549 CGTTGGTCCCAATCCGCCAAATCGGAACGAAGATCAAGTTCGTCAACGGTCCAAAA 19494 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 36884 TTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 |||||| ||||| ||||||||| | ||||||||||| ||||| || |||||||| || | Sbjct 20354 TTTTTG-TATTCGCCAACTCGTTTCTCGAAAAAATTCGTCTTACCCTCTAGTGAAATCAT 20296 Query 36944 TTCCATAAAATCAAATGGATT 36964 ||||| |||||||| ||||| Sbjct 20295 ATCCATGAAATCAAAGGGATT 20275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314282653600