Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001605315.1_202016-03-31] 340 sequences; 41,626,055 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq113 107 1e-18 >seq1 Length=2331425 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 |||| || || |||||||| || |||||||||||||| || | | | || |||| |||| Sbjct 481929 CCAAGTGAAGGGTGCTCTCCTTCTGAATATTGTAATCCGACAAAGTACGCCCGTCCTCCA 481988 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 | ||||| |||||||| || || ||||| || || | |||| ||||||||| || || Sbjct 481989 ATTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAA 482048 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 |||| || ||| | | | || || | ||| || |||| ||| ||||| |||| Sbjct 482049 TCTTCGCCTTCACATTGTCAATCGTATCCGAAGACTCGACTTCCAACGTGATCGTCTTTC 482108 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||| || || || || ||||| Sbjct 482109 CCGTCAAAGTCTTCACGAAGATTTGCAT 482136 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||||||||| ||| |||| |||| || | ||| Sbjct 482390 TGGAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCCTCGAGTTGC 482449 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | |||| ||||||||| || ||||||| Sbjct 482450 TTGCCGGCGAAAATTAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTATCCTGAATCTTT 482509 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||| || |||| ||| ||||| || || ||| Sbjct 482510 GCCTTGACATTGTCGATGGTGTCGGAAGACTCGACTTCCAGCGTGATCGTCTTGCCGGTC 482569 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||||||||| Sbjct 482570 AATGTCTTCACAAAAATCTGCAT 482592 >seq113 Length=2004859 Score = 107 bits (118), Expect = 1e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 48557 CACCAAA-TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| || || ||| ||| || ||||| ||||||||||| ||| | ||| | || | Sbjct 833883 CACCAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTT 833942 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 ||| |||||| ||||| || |||| |||||||| || | ||| | ||||||||||| Sbjct 833943 CCAGCTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCT 834002 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 ||||| || || | | | || || | ||| || |||| || || || | Sbjct 834003 GGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACTTCCAGGGTGATGGTCT 834062 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||| ||||| || ||||||||||| Sbjct 834063 TTCCCGTCAGTGTTTTGACGAAAATCTGCAT 834093 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| || || ||| | || |||| || | |||| Sbjct 833325 TGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGCCCGTCCTCGAGCTGC 833384 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| |||||||| || | ||| | ||||||||||| |||||| Sbjct 833385 TTCCCAGCAAAAATCAAGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTC 833444 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | || ||||| | ||||| || |||||||| Sbjct 833445 GCCTTGACATTGTCGATAGTGTCCGATGATTCGACCTCGAGGGTAATGGTCTTTCCCGTG 833504 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||| ||||| Sbjct 833505 AGCGTCTTGACGAAAATTTGCAT 833527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| || ||||| || ||| | || |||| || | |||||| || || || Sbjct 833619 CTCCTTCTGAATGTTATAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 833678 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| || || | ||||| ||||||||||| |||||| ||| || Sbjct 833679 GATCAAACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTGACGTT 833738 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | ||||| || || || || | || || || Sbjct 833739 GTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATAGTCTTCCCAGTGAGGGTCTTGAC 833798 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 833799 AAAGATCTGCAT 833810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936021489820